View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568-Insertion-11 (Length: 289)
Name: NF4568-Insertion-11
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 10241058 - 10240877
Alignment:
| Q |
43 |
caccattaaataataagattacactttcacattcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacactt |
142 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10241058 |
caccattaaataataagattatactttcacattcattaaaggtaaaagaacaaatcattgatatataacgaggaatgaatcaaccacgggattcacactt |
10240959 |
T |
|
| Q |
143 |
tcatatctattcaaatgaaaagattacatatacaaaagaaaatcacgtctgcaactaagaacacatctaatacaaatcataa |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10240958 |
tcatatccattcaaatgaaaagattacatatacaaaagaaaaacacatctgcaactaagaacacatgtaatacaaatcataa |
10240877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 328694 - 328817
Alignment:
| Q |
74 |
ttcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacactttcatatctattcaaatgaaaagattacatat |
173 |
Q |
| |
|
|||||||| |||||| ||||||||| |||| |||||| ||||||| |||||| || ||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
328694 |
ttcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaaca--ggattcacactttcataaccattaaaatgaaaagattacatat |
328791 |
T |
|
| Q |
174 |
acaaaagaaaatcacgtctgcaactaaga |
202 |
Q |
| |
|
||||| || ||| ||||||||||||| |
|
|
| T |
328792 |
gcaaaataa---cacatctgcaactaaga |
328817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 47817854 - 47817981
Alignment:
| Q |
45 |
ccattaaataataagatt-acactttcacattcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacac-tt |
142 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||| ||||||| ||| || || |||||||||| || |
|
|
| T |
47817854 |
ccattaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtatattgaggaataaatgaa--acaggattcacacttt |
47817951 |
T |
|
| Q |
143 |
tcatatctattcaaatgaaaagattacatat |
173 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |
|
|
| T |
47817952 |
tcataac-attcaaatgaaaagattacatat |
47817981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 26049274 - 26049132
Alignment:
| Q |
63 |
acactttcacattcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacactttcatatctattcaaatgaaa |
162 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||||| |||| |||||| || ||| |||||| || |||||| |||||||||| | ||| |||||||| |
|
|
| T |
26049274 |
acactttcatattcattaaaagtaaaagaacaaatctttgacatataataagtaataaatcaaaca--ggattctcactttcataaccattaaaatgaaa |
26049177 |
T |
|
| Q |
163 |
agattacatatacaaaagaaa-atcacgtctgcaactaagaacac |
206 |
Q |
| |
|
||||||||| | ||||| ||| | ||| | ||||||||||||||| |
|
|
| T |
26049176 |
agattacatctgcaaaaaaaataacacatttgcaactaagaacac |
26049132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 5827113 - 5827255
Alignment:
| Q |
63 |
acactttcacattcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacactttcatatctattcaaatgaaa |
162 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||| |||| |||||| ||| ||| |||||| | |||||| |||||||||| | ||| |||| ||| |
|
|
| T |
5827113 |
acactttcatattcattaaaggaaaaagaacaaatctttgacatataatgagcaataaatcaaata--ggattctcactttcataaccattaaaataaaa |
5827210 |
T |
|
| Q |
163 |
agattacatatacaaaagaaaatcacgtctgcaactaagaacaca |
207 |
Q |
| |
|
||||||||| | ||||| || | ||| |||||||||||||||||| |
|
|
| T |
5827211 |
agattacatctgcaaaaaaataacacatctgcaactaagaacaca |
5827255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 23668861 - 23668796
Alignment:
| Q |
45 |
ccattaaataataagatt-acactttcacattcattaaaggtaaaggaacaaatcgttgatatata |
109 |
Q |
| |
|
||||||| |||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
23668861 |
ccattaagtaataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtata |
23668796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 9369721 - 9369597
Alignment:
| Q |
47 |
attaaataataagatt-acactttcacattcattaaaggtaaaggaacaaatcgttgatatataacgaggaatgaatcaaccacgggattcacac-tttc |
144 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||| ||||||||| ||||| |||| ||||||| |||||| || ||||||||| |||| |
|
|
| T |
9369721 |
attaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcattgatgtatattgaggaataaatcaa--acatgattcacacttttc |
9369624 |
T |
|
| Q |
145 |
atatctattcaaatgaaaagattacat |
171 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
9369623 |
ataaacattcaaatgaaaagattacat |
9369597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University