View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568-Insertion-15 (Length: 255)
Name: NF4568-Insertion-15
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 39774083 - 39773832
Alignment:
| Q |
8 |
cttacaaaatattttgannnnnnnnagggataatggttaatagtcgtagataggtgattggcttttgtttacatggtcattagcgacaagtgtgaaggtt |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39774083 |
cttacaaaatattttgattttttttagggataatggttaatagccgtagataagtgattggcttttgtttacatggtcattagcgacaagtgtgaaggtt |
39773984 |
T |
|
| Q |
108 |
tgactttgattcaagtgttcactttgatttttgtggttagatttctggtgatatccctaaatttatgtggtct-----ttggtgttgttatgattttctt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
39773983 |
tgactttgattcaagtgttcactttgatttttgtggttagatttccggtgatagccctaaatttatatggtctttctattggtggtgttatgattttctt |
39773884 |
T |
|
| Q |
203 |
ttggatgtttcgtctatatacagtatctattttttatagttactgtctcctag |
255 |
Q |
| |
|
||||||||||||| |||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
39773883 |
ttggatgtttcgtttatata-tgtgtctgttttttatagttactgtctcctag |
39773832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 34573191 - 34573145
Alignment:
| Q |
107 |
ttgactttgattcaagtgttcactttgatttttgtggttagatttct |
153 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
34573191 |
ttgactttgatttaagtgttgactttgatttaagtggttagatttct |
34573145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 34572362 - 34572321
Alignment:
| Q |
181 |
ttggtgttgttatgattttcttttggatgtttcgtctatata |
222 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
34572362 |
ttggtgttgttatggttttcttttggatgttccgtccatata |
34572321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University