View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568-Insertion-18 (Length: 227)
Name: NF4568-Insertion-18
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 37893124 - 37893343
Alignment:
| Q |
8 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
107 |
Q |
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| T |
37893124 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
37893223 |
T |
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| Q |
108 |
aaaatgtcttttgatcagaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
207 |
Q |
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| T |
37893224 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
37893323 |
T |
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| Q |
208 |
ttcttatgcttccaggttag |
227 |
Q |
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|||||||||||||||||||| |
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| T |
37893324 |
ttcttatgcttccaggttag |
37893343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 37188227 - 37188439
Alignment:
| Q |
8 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188227 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
37188326 |
T |
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| Q |
108 |
aaaatgtcttttgatcagaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
207 |
Q |
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| T |
37188327 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccatcctctgattgggatcatgaggatacaagtgacacactaa |
37188426 |
T |
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| Q |
208 |
ttcttatgcttcc |
220 |
Q |
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| T |
37188427 |
ttcttatgcttcc |
37188439 |
T |
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Back To:
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