View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568-Insertion-3 (Length: 709)

Name: NF4568-Insertion-3
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568-Insertion-3
NF4568-Insertion-3
[»] chr8 (1 HSPs)
chr8 (33-681)||(24694800-24695433)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 33 - 681
Target Start/End: Complemental strand, 24695433 - 24694800
Alignment:
Q  33 gccaagtttgagaaagcaccgaaagggttgctgttgatttgactttggccaatatgg-tcaatatggaccatgaggaatgaaattatcatttattcttcn 131  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||       
T  24695433 gccaagtttgagaaagcacccaaagggttgctgttgatttgactttggccaatatgggtcaatatggaccatgaggaatgaaattatcttttattct--- 24695337  T
Q  132 nnnnnnnnnnnnnnggtgcaagttatcttttattctaaata----gtccaaaatagaagaggtggtggatagaattaagcatatatcttggaaatggttt 227  Q
                  ||| | |||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||    
T  24695336 --ctttttttttttggtactagttatcttttattctaaataaatagtccaaagtagaagaggtggtggatagaattaagcatatatattgtgaatggttt 24695239  T
Q  228 gtgcnnnnnnnnnnnn-tgatatccatgtttattttatgaatggtttgtgaaccctttattatgcattgggaggtaactttgcaagaattttattctttt 326  Q
    ||||             ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||| || ||||    
T  24695238 gtgcaaaacaaaaaaaatgatatccatgtttattttatgaatggtttgtgaaccctttataatgcattgggaggtaactttgcaag---ttttttttttt 24695142  T
Q  327 ttaaaaaacttgatttttgttgaagaagctttataagtaaaattaatatttgtaatttacacaaaaatatgaattatttattagatttgtatatatgtca 426  Q
    ||           ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695141 tt-----------ttttttttgaagaagcattataagtaaaattaatatttgtaatttacacaaaaatatgaattatttattagatttgtatatatgtca 24695053  T
Q  427 caagatgcactccaactccgggccaatttgtaggaagttggcgatgacagtacctaggtctagtgggaggaacagtggaaatgtgggatgtaaatggaca 526  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695052 caagatgtactccaactccgggccaatttgtaggaagttggcaatgacagtacctaggtctagtgggaggaacagtggaaatgtgggatgtaaatggaca 24694953  T
Q  527 tattatatggtagggaaaaggacaaatgagaacagctctggtagggtaaggtacgtattaacaaagcataacacacaagctgagcttaacttgagggatt 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  24694952 tattatatggtagggaaaaggacaaatgagaacagctctggtagggtaaggtacgtattaacaaagcataacacacaagctaagcttaacttga-ggatt 24694854  T
Q  627 tcaatttcatgcatatcatcaaaaaagacatgaaataggggactaaagggctgaa 681  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  24694853 tcaatttcatgcatatcatc-aaaaagacatgaaataggggactaagaggctgaa 24694800  T

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