View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568-Insertion-5 (Length: 679)

Name: NF4568-Insertion-5
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568-Insertion-5
NF4568-Insertion-5
[»] chr4 (9 HSPs)
chr4 (94-503)||(50968067-50968477)
chr4 (535-656)||(50968491-50968597)
chr4 (268-346)||(6067669-6067747)
chr4 (272-345)||(34505290-34505363)
chr4 (268-346)||(31553694-31553772)
chr4 (271-345)||(4690134-4690208)
chr4 (272-346)||(33871041-33871115)
chr4 (272-345)||(52818059-52818132)
chr4 (272-346)||(6071145-6071218)
[»] chr8 (7 HSPs)
chr8 (268-349)||(40866295-40866376)
chr8 (268-346)||(7895149-7895227)
chr8 (269-345)||(44415934-44416010)
chr8 (268-350)||(42014301-42014383)
chr8 (272-346)||(24864608-24864682)
chr8 (272-346)||(38085946-38086020)
chr8 (271-344)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (268-346)||(3992803-3992881)
chr6 (268-346)||(7432416-7432494)
chr6 (268-346)||(7441933-7442011)
chr6 (268-346)||(7425621-7425699)
chr6 (271-344)||(7432982-7433055)
chr6 (268-346)||(7418530-7418608)
chr6 (268-346)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (272-346)||(29618312-29618386)
chr3 (272-350)||(41552096-41552174)
chr3 (272-346)||(11580203-11580277)
chr3 (272-344)||(1488013-1488085)
chr3 (272-344)||(2031252-2031324)
chr3 (272-344)||(35679472-35679544)
chr3 (272-346)||(35687869-35687943)
chr3 (272-346)||(52638656-52638730)
chr3 (299-346)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (271-350)||(3197563-3197642)
chr2 (268-353)||(34643000-34643085)
chr2 (272-352)||(39082462-39082542)
chr2 (272-347)||(24359790-24359865)
chr2 (272-346)||(4713110-4713184)
chr2 (268-346)||(8884447-8884525)
chr2 (271-346)||(36772397-36772472)
chr2 (271-346)||(36793511-36793586)
chr2 (271-346)||(37559326-37559401)
chr2 (272-346)||(42968150-42968224)
chr2 (272-346)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (271-348)||(37022194-37022271)
chr7 (266-346)||(30034301-30034381)
chr7 (268-348)||(46075148-46075228)
chr7 (272-350)||(25287956-25288034)
chr7 (268-344)||(46972135-46972211)
chr7 (272-350)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (270-351)||(23058051-23058132)
chr1 (268-347)||(30340907-30340986)
chr1 (272-348)||(37369512-37369588)
chr1 (270-344)||(23057679-23057753)
chr1 (270-344)||(23057864-23057938)
chr1 (270-344)||(23061980-23062054)
chr1 (268-350)||(30320741-30320823)
chr1 (286-339)||(23057568-23057621)
chr1 (286-339)||(23061869-23061922)
chr1 (271-344)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (271-346)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 94 - 503
Target Start/End: Original strand, 50968067 - 50968477
Alignment:
Q  94 agctcacagatactttccgcaatctgaaaaccctagtttcagtctaacgtattggcgggaagggaacatttctgagtatatattgcttgnnnnnnnntat 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  50968067 agctcacagatactttccgcaatctgaaaaccctagtttcagtctaacgtattggcgggaagggaacatttctgagtatatattgcttgaaaaaatatat 50968166  T
Q  194 attttgtaatagagaaaaagaatatgctgtcnnnnnnn-tatgtaataagcgaaaaaaggaatatttgaaattataaaatggagatgcgggggatcgaac 292  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50968167 attttgtaatagagaaaaagaatatgctgtcaaaaaaaatatgtaataagcgaaaaaaggaatatttgaaattaaaaaatggagatgcgggggatcgaac 50968266  T
Q  293 cccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaattacattctcttgatcaataaaatattatgttatagaaa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  50968267 cccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaattacatcctcttgatcattaaaatattatgttatagaaa 50968366  T
Q  393 aaccggatagcatggttgcacgtagccgttcgttttgcttcggaaatagacaccatactgggattgataaatgttttgtagagtcctctgacattggtaa 492  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968367 aaccggatagcatggttgcacatagccgttcgttttgcttcggaaataaacaccatactgggattgataaatgttttgtagagtcctctgacattggtaa 50968466  T
Q  493 gaatcctagat 503  Q
    |||||||||||    
T  50968467 gaatcctagat 50968477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 50968491 - 50968597
Alignment:
Q  535 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaatcctctctcaaggcaaagttgtagcaaaaaattgtttgataac 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||| ||||||    
T  50968491 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaat---------------agttgtagcaaaaaattgttcgataac 50968575  T
Q  635 cttacgacttattgagtataat 656  Q
    ||||| ||||||||||||||||    
T  50968576 cttaccacttattgagtataat 50968597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 6067747 - 6067669
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067747 aaaatggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 31553772 - 31553694
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31553772 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 31553694  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 4690134 - 4690208
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690134 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 33871041 - 33871115
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871041 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    ||||||||| ||| ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6071218 tggagatgcgggg-atcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 40866295 - 40866376
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866295 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 40866376  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7895149 - 7895227
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7895149 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 7895227  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 44416010 - 44415934
Alignment:
Q  269 aaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  44416010 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 42014383 - 42014301
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  42014383 aaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacacccccaagttg 42014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 38086020 - 38085946
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  38086020 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 38085946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 9963285 - 9963358
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963285 atggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

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Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 3992803 - 3992881
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992803 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7432416 - 7432494
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432416 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7441933 - 7442011
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441933 aaaatggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7425621 - 7425699
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| ||| | |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425621 aaaatggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 7432982 - 7433055
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    |||||||||||||| ||||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432982 atggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7418530 - 7418608
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||| |||| ||| | |||||| |||||| ||||| |||||||| || |||||| ||||||||||||||||    
T  7418530 aaaatggagatgtggggtatcaatccccgtccctctcacatgctaagcgagcactataccatctgagctacatccccat 7418608  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7414581 - 7414659
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||| |||  || ||||| |||| | |||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414581 aaaatggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 41552174 - 41552096
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  41552174 tggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccatgttg 41552096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 11580277 - 11580203
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11580277 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 11580203  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 35679544 - 35679472
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679544 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 35687943 - 35687869
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 52638656 - 52638730
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||  || ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccat 52638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 35692264 - 35692217
Alignment:
Q  299 cctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692264 cctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 3197642 - 3197563
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3197642 atggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccaggttg 3197563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 34643000 - 34643085
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaa 353  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34643000 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttgaaa 34643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 39082542 - 39082462
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaa 352  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgatgaa 39082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 24359865 - 24359790
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 347  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 24359790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 4713110 - 4713184
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713110 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 4713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 8884525 - 8884447
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884525 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 36772397 - 36772472
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772397 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 36793511 - 36793586
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793511 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 37559326 - 37559401
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559326 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 42968224 - 42968150
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccat 42968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 37022194 - 37022271
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37022194 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 30034381 - 30034301
Alignment:
Q  266 ataaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034381 ataaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 46075148 - 46075228
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46075148 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 46075228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 25288034 - 25287956
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25288034 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttg 25287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 46972135 - 46972211
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972135 aaaatggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 34984430 - 34984508
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccttgttg 34984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 23058051 - 23058132
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttga 351  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  23058051 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccttgttga 23058132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 30340907 - 30340986
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 347  Q
    ||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340907 aaaatggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 30340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 37369512 - 37369588
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37369512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 37369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23057679 - 23057753
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23057679 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23057864 - 23057938
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23057864 aatggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23061980 - 23062054
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23061980 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 30320741 - 30320823
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 350  Q
    ||||||||||||| ||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30320741 aaaatggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatccccaagttg 30320823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 23057568 - 23057621
Alignment:
Q  286 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 339  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23057568 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 23061869 - 23061922
Alignment:
Q  286 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 339  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23061869 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 43066074 - 43065996
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaa-----gcgagcgctctaccatttgagctacatcccc 344  Q
    |||||||||||||| ||||| |||||| |||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066074 atggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 2626071 - 2626146
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626071 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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