View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568-Insertion-6 (Length: 615)
Name: NF4568-Insertion-6
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Original strand, 38487451 - 38488058
Alignment:
| Q |
8 |
tttggttgcatcatggtttatggcaccctttgtattcaatccttctggttttgactggttaaaaaccgtgtacgattttgaagactttatcaactggatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487451 |
tttggttgcatcatggtttatggcaccctttgtattcaatccttctggttttgactggttaaaaaccgtgtacgattttgaagactttatcaactggatt |
38487550 |
T |
|
| Q |
108 |
tggttccgtggaagtgtgtttgctaaagctgaagagagctgggaaaagtggtggtacgaagagcaagatcatctaaagggaacaggattttggggaaagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487551 |
tggttccgtggaagtgtgtttgctaaagctgaagagagctgggaaaagtggtggtacgaagagcaagatcatctaaagggaacaggattttggggaaagc |
38487650 |
T |
|
| Q |
208 |
ttatggagataattttagacctccgtttcttcgtcttccagtacggtattgtctaccagctcgacatagctgcaggaagtaccagcatagttgtttactt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38487651 |
ttatggagataattttagacctccgtttcttcgtcttccagtacggtattgtctaccagctcggcatagctgcaggaagtaccagcatagttgtttactt |
38487750 |
T |
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| Q |
308 |
gctatcatggatttatgttgttgttgtgtttggtatttatgtggtggtagcatatgcaaggaatgaatatgatgcaaaaaatcacatctattacagattg |
407 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487751 |
gctatcatggatttatgttgttgtcgtgtttggtatttatgtggtggtagcatatgcaaggaatgaatatgatgcaaaaaatcacatctattacagattg |
38487850 |
T |
|
| Q |
408 |
attcagtcacttgtcatagtttttgccatatttgtgatacttgctttgttggaattcactcaattcaaattcacggacctttttactagtttgttagcat |
507 |
Q |
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| T |
38487851 |
attcagtcacttgtcatagtttttgccatatttgtgatacttgctttgttggaattcactcaattcaaattcatggacctttttactagtttgttagcat |
38487950 |
T |
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| Q |
508 |
tcattcccacaggctggggtatgttattgattgctcaagtatttagaccagttttgcagcgctgcataatttggcatggtgttgtttcgatggctcgtct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487951 |
tcattcccacaggctggggtatgttattgattgctcaagtatttaggccagttttgcagcgctgcataatttggcatggtgttgtttcgatggctcgtct |
38488050 |
T |
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| Q |
608 |
atatgata |
615 |
Q |
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| T |
38488051 |
atatgata |
38488058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 12 - 615
Target Start/End: Original strand, 30121854 - 30122457
Alignment:
| Q |
12 |
gttgcatcatggtttatggcaccctttgtattcaatccttctggttttgactggttaaaaaccgtgtacgattttgaagactttatcaactggatttggt |
111 |
Q |
| |
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|||||||||||| | ||||||| ||||| |||||||| ||||| || || ||||||||||| || || |||||||| |||||||| ||||||||||||| |
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| T |
30121854 |
gttgcatcatgggtggtggcaccgtttgtgttcaatccctctggcttcgattggttaaaaactgtttatgattttgatgactttatgaactggatttggt |
30121953 |
T |
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| Q |
112 |
tccgtggaagtgtgtttgctaaagctgaagagagctgggaaaagtggtggtacgaagagcaagatcatctaaagggaacaggattttggggaaagcttat |
211 |
Q |
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| T |
30121954 |
acagtggaagtgtgtttgccaaagctgaacagagctgggaaaggtggtggtatgaagagcaggatcatctaaaggtaaccggcctttggggaaagctttt |
30122053 |
T |
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| Q |
212 |
ggagataattttagacctccgtttcttcgtcttccagtacggtattgtctaccagctcgacatagctgcaggaagtaccagcatagttgtttacttgcta |
311 |
Q |
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||| ||||| |||||||| || |||||| | |||||||| || ||||| ||||| || | || |||| |||| || || || | ||| ||||||||| |
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| T |
30122054 |
ggaaataatcttagaccttcgcttcttctttttccagtatggaattgtttaccaacttggaatttctgctggaaataatagtattgctgtatacttgcta |
30122153 |
T |
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| Q |
312 |
tcatggatttatgttgttgttgtgtttggtatttatgtggtggtagcatatgcaaggaatgaatatgatgcaaaaaatcacatctattacagattgattc |
411 |
Q |
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||||||||||||||||||||||| | ||| ||||||| ||||||| |||||| |||| ||||| || ||| | || ||||||||| | | ||| |
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| T |
30122154 |
tcatggatttatgttgttgttgtatctgggatttatgccgtggtagtgtatgcacggaacaaatattcggcgaaagagcatatctattaccggcttgttc |
30122253 |
T |
|
| Q |
412 |
agtcacttgtcatagtttttgccatatttgtgatacttgctttgttggaattcactcaattcaaattcacggacctttttactagtttgttagcattcat |
511 |
Q |
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||| ||||||||| || |||| ||| || ||||| |||||||| |||||||||| ||||||||||| ||| |||||||||| ||||| |||||| | |
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| T |
30122254 |
agttccttgtcataattcttgcaatacttctgatagttgctttgctggaattcacagaattcaaattcgtggatatttttactagcttgttggcattcct |
30122353 |
T |
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| Q |
512 |
tcccacaggctggggtatgttattgattgctcaagtatttagaccagttttgcagcgctgc-ataatttggcatggtgttgtttcgatggctcgtctata |
610 |
Q |
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||||||||| ||||| || |||||||||| ||||| || ||||| | |||||| || | ||||||||| |||||||||| | |||||||||| || |
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| T |
30122354 |
tcccacaggatggggcctgctattgattgcccaagttttccgaccattcttgcag-tctacgataatttggagtggtgttgttgcagtggctcgtcttta |
30122452 |
T |
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| Q |
611 |
tgata |
615 |
Q |
| |
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||||| |
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| T |
30122453 |
tgata |
30122457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 22218405 - 22218348
Alignment:
| Q |
175 |
atcatctaaagggaacaggattttggggaaagcttatggagataattttagacctccg |
232 |
Q |
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|||||||||||| ||| | ||||||||||||||| || |||| |||||||||||||| |
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| T |
22218405 |
atcatctaaaggtaaccaggttttggggaaagcttgtgcagatgattttagacctccg |
22218348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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