View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568-Insertion-7 (Length: 534)
Name: NF4568-Insertion-7
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 32787332 - 32786947
Alignment:
| Q |
8 |
tatagaagatggtaacatggacggttactcaaattctccaagctttgagatcattgaggaaacaaaggttagtcatagaatgttggtttcaactcaacaa |
107 |
Q |
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| T |
32787332 |
tatagaagatggtaacatggacggttactcaaattctccaagctttgagatcattgaggaaacaaaggttagtcatagaatgttggtttcaactcaacaa |
32787233 |
T |
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| Q |
108 |
gtagccatgacattatttcaccaagttgttccttcacaaacacttcaaattcaactcaatccaatgatgccaaacaatccaaactctaaagagaatgtag |
207 |
Q |
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| T |
32787232 |
gtagccatgacattatttcaccaagttgttccttcacaaacacttcaaattcaactcaatccaatgatgccaaacaatccaaactctaaagagaatgtag |
32787133 |
T |
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| Q |
208 |
atgcaattatgatgataatggagaatcaaggatctttctttaggaagttcaaggcctatgtgatggggaagtggaacttattcaatccatcaaagaaaat |
307 |
Q |
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| T |
32787132 |
atgcaattatgatgataatggagaatcaaggatctttctttaggaagttcaaggcctatgtgatggggaagtggaacttattcaatccatcaaaggaaat |
32787033 |
T |
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| Q |
308 |
agcaagtttggttgtatttgtatttgcacttcttgtgatgcatcgtgtttatttggaggaagaagtggaaatatgcaaaccaaacc |
393 |
Q |
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| T |
32787032 |
agcaagtttggttgtatttgtatttgcacttcttgtgatgcatcgtgtttatttggaggaagaagtggaaatatgcaaaccaaacc |
32786947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 462 - 534
Target Start/End: Complemental strand, 32786878 - 32786806
Alignment:
| Q |
462 |
gtttggtttgttggtgttaaatgtgagaaaggattaagtgtggcctttaaggaaataggcattttcctcacca |
534 |
Q |
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| T |
32786878 |
gtttggtttgttggtgttaaatgtgagaaaggattaagtgtggcctttaaggaaataggcattttcctcacca |
32786806 |
T |
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