View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_18 (Length: 410)
Name: NF4568_high_18
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 38659675 - 38660053
Alignment:
| Q |
18 |
aaaacttaccacattctccactatacaacttgttattatatatagtaacacaacctttcttattctgcatgtattccattccatccagttccattacctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38659675 |
aaaacttaccacattctccactatacaacttgttattatatatagtaacacaacctttcttattctgcatgtatttcattccatccagttccattacctt |
38659774 |
T |
|
| Q |
118 |
ataactcaattgcaacttgtgtgttctatagtctactagtgctcctagtcacttgaacatagaaagtagaatctcctttggtttttctttcaacttcctc |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38659775 |
ataactcaattgcaacttgtgtgttctatagtgtactagtgctcctagtcacttgaacatagaaagtagaatctcctttggtttttctttcaacttcctc |
38659874 |
T |
|
| Q |
218 |
aaactaaaggttactatttgtgactttattcctttcatctagttgtttttacacttgacactcactaagccaattaatttgtatctc--atttttcctaa |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38659875 |
aaactaaaggttactatttgtgactttattcctttcatctagttgtttttacacttgacactcactaagccaattaatttgtatctcatatttttcctaa |
38659974 |
T |
|
| Q |
316 |
tttttagtagaaactatatttaaaatgaagcactctcctattttaacactattattctctttatattttcttacttcat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38659975 |
tttttagtagaaactatatttaaaatgaagcactctcctattttaacactattattctctttatattttcttacttcat |
38660053 |
T |
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