View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_19 (Length: 391)
Name: NF4568_high_19
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 22 - 379
Target Start/End: Original strand, 3657190 - 3657544
Alignment:
| Q |
22 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
121 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3657190 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
3657286 |
T |
|
| Q |
122 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3657287 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
3657386 |
T |
|
| Q |
222 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggctttggttttgcacct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3657387 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggctttggttttgcacct |
3657486 |
T |
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| Q |
322 |
tatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcatctc |
379 |
Q |
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| T |
3657487 |
tatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcgtctc |
3657544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 22 - 379
Target Start/End: Original strand, 7841475 - 7841829
Alignment:
| Q |
22 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
121 |
Q |
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| T |
7841475 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatttgcattacctttaataggtcacctccatctactaggaaaacaaatccctcttg |
7841571 |
T |
|
| Q |
122 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7841572 |
caagaatctttgcttcattttctgacaaatatggtcctgtcttccaaatccgtttaggagcataccctgcacttattatttccaacaaagaagcaatcaa |
7841671 |
T |
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| Q |
222 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggctttggttttgcacct |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
7841672 |
agaatgtttcaccacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggatttagttttgcacct |
7841771 |
T |
|
| Q |
322 |
tatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcatctc |
379 |
Q |
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| ||||||||||| | ||||||| ||| |||||||| ||||| ||||||| |||| |
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| T |
7841772 |
tctggcccatatttttcaaagctaaagaaaataaccatggttgaattactttcgtctc |
7841829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 7845401 - 7845648
Alignment:
| Q |
22 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7845401 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatctactaggaaaacaaatccctcttg |
7845497 |
T |
|
| Q |
122 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
221 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || | |||||||| |
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| T |
7845498 |
caagaatctttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcataccctgcacttattatttccaaccaaaatgcaatcaa |
7845597 |
T |
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| Q |
222 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaag |
272 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
7845598 |
agaatgtttcaccacaaatgacaaaatcttatcctcaagaccaaaatcaag |
7845648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 7839419 - 7839660
Alignment:
| Q |
22 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
121 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| || ||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
7839419 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatttgcattaccattaataggtcagctccatctactaggaaaataaatctctcttg |
7839515 |
T |
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| Q |
122 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
221 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| || | |||||||| |
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| T |
7839516 |
caagaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcatgccctgcacttattatttccaaccaaaatgcaatcaa |
7839615 |
T |
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| Q |
222 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaa |
266 |
Q |
| |
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| |||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
7839616 |
acaatgtttcaccacaaatgacaaaatcttagcctcaaaaccaaa |
7839660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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