View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_high_20 (Length: 387)

Name: NF4568_high_20
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_high_20
NF4568_high_20
[»] chr7 (5 HSPs)
chr7 (11-346)||(8299450-8299785)
chr7 (69-220)||(11226207-11226358)
chr7 (69-112)||(1466792-1466835)
chr7 (46-212)||(1909654-1909820)
chr7 (255-360)||(1909519-1909623)
[»] chr4 (2 HSPs)
chr4 (11-286)||(5450571-5450843)
chr4 (69-285)||(4608372-4608587)
[»] scaffold0168 (1 HSPs)
scaffold0168 (83-172)||(24143-24232)
[»] scaffold0070 (1 HSPs)
scaffold0070 (69-145)||(3416-3492)
[»] chr1 (4 HSPs)
chr1 (47-110)||(34744059-34744121)
chr1 (253-333)||(24464770-24464849)
chr1 (69-107)||(19865965-19866003)
chr1 (69-141)||(24464934-24465006)
[»] chr5 (4 HSPs)
chr5 (114-174)||(18477034-18477094)
chr5 (72-172)||(10282443-10282543)
chr5 (69-145)||(18757753-18757828)
chr5 (69-119)||(16102641-16102691)
[»] chr2 (1 HSPs)
chr2 (114-174)||(20488710-20488770)
[»] chr3 (2 HSPs)
chr3 (78-219)||(7857677-7857816)
chr3 (11-101)||(17631235-17631327)
[»] chr6 (1 HSPs)
chr6 (69-117)||(20587552-20587600)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 8299450 - 8299785
Alignment:
Q  11 tatactaatttaaatgatatttgtatcaattaggctttt-ttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatatttta 109  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8299450 tatactaatttaaatgatatttgtatcaattaggctttttttataattgatttctaccaaaaacaagtcggtaagtgttatggaaaataacaatatttta 8299549  T
Q  110 gcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcacaagga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  8299550 gcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacatttgagtggatgcaagaaaaaaaatcacaagga 8299649  T
Q  210 ttttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||    
T  8299650 ttttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtacgggcaagtctta-gtataccactaacctggaacaaaa 8299748  T
Q  310 atcatgaacataaaatttattcaaaacaggtagttca 346  Q
    |||||||||||||||||||||||||||||||||||||    
T  8299749 atcatgaacataaaatttattcaaaacaggtagttca 8299785  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 11226358 - 11226207
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaa 168  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||| |||| ||||||||||| |||  |||||||||| || ||||| |||||||||||||    
T  11226358 aaaacaaatcgataagtgctatgaaaaataacagtaattt-gcacttatcaactctccccaccttttaactttgtttgtcgtcaaacaaaagtcctaaaa 11226260  T
Q  169 aagatacattcgagtgaatgcaaga---aaataaatcacaaggattttcagtgaa 220  Q
    ||||||||  ||| ||||||||| |   |||| | ||||||||||||| ||||||    
T  11226259 aagataca--cgattgaatgcaaaaaagaaatgattcacaaggatttttagtgaa 11226207  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 1466835 - 1466792
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1466835 aaaacaagtcgataagtgctatggaaaataacaatattttagca 1466792  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 1909820 - 1909654
Alignment:
Q  46 ttttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 145  Q
    |||| ||| ||||||||||   |||||||||| |||||||||||| ||||| |||||||||||| || |||| || ||| |  |||||| ||||||||||    
T  1909820 ttttctatgattgatttcttgaaaaaacaagttgataagtgctatagaaaaaaacaatattttaacacttatcaaatcttcttaacttaaaactttgttt 1909721  T
Q  146 ttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcacaaggattt 212  Q
     || | ||| |||| |  | ||| ||||||||| || | |||||||| |||||| | ||||| ||||    
T  1909720 gtcgtgaaacaaaaattttcaaatagatacatttgattaaatgcaagtaaataatttacaagaattt 1909654  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 360
Target Start/End: Complemental strand, 1909623 - 1909519
Alignment:
Q  255 attcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaaatcatgaacataaaatttattcaaaacaggtagttcaactcatac 354  Q
    |||||||| | ||||| || ||||||||||||| ||||||||| | || || ||| ||||||||||||||||| ||||| |||   ||||||  ||||||    
T  1909623 attcaaattggattgtacgagcaagtcttatgtctaccactaaactggaac-aaagtcatgaacataaaatttgttcaagacacaaagttcaggtcatac 1909525  T
Q  355 atccca 360  Q
    ||||||    
T  1909524 atccca 1909519  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 5450843 - 5450571
Alignment:
Q  11 tatactaatttaaatgatatttgtatcaa-----ttaggcttttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatat 105  Q
    ||||||||| |||| ||||||||||||||     | |||  ||||||||| ||||||||  ||||| ||  ||||||| |||||||||||||||||||||    
T  5450843 tatactaatataaacgatatttgtatcaaactgatgaggtatttttataaatgatttctcgcaaaa-cacttcgataactgctatggaaaataacaatat 5450745  T
Q  106 tttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacattcgagtgaatgcaagaaaataaatcaca 205  Q
    ||| ||| |||| ||| |||||||||||| |||| ||||| || ||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  5450744 tttggcacttatcaacgctccccaacttataactctgtttgtcctcaaacaaatg-cctaaaaaagatacattcgattgaatgcaagaaaataaatcaca 5450646  T
Q  206 aggattttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaatagaattgtgcgggcaagtcttatg 286  Q
    || |||||| ||||| ||  | ||||||    |||||||||||||  ||||||| || | ||| ||| |||||||||||||    
T  5450645 agaattttcggtgaatca--aacatttt----gaattttaagatgcttgattcagattggattctgctggcaagtcttatg 5450571  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 285
Target Start/End: Complemental strand, 4608587 - 4608372
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaa 168  Q
    ||||||||||||||||||| ||| ||||||  | || |||  || |||| ||| |||||||||||||||||||||||||| ||||| ||||||  | |||    
T  4608587 aaaacaagtcgataagtgcaatgaaaaatataagtaatttgacacttatcaaccctccccaacttagaactttgtttttcctcaaacaaaagttatgaaa 4608488  T
Q  169 aagatacattcgagtgaatgcaagaaaataaatcacaaggattttcagtgaaccattatcattttgaaagaattttaagatgtgtgattcaaa-tagaat 267  Q
    |||||||||  || | ||||||||||||| | ||||||||||||| ||||||  | ||   |||||||| |||||| | |||  ||||||||| | ||||    
T  4608487 aagatacat--gattaaatgcaagaaaatgattcacaaggattttaagtgaattaataagtttttgaaacaattttgaaatgcatgattcaaagttgaat 4608390  T
Q  268 tgtgcgggcaagtcttat 285  Q
    ||| ||||||||||||||    
T  4608389 tgtacgggcaagtcttat 4608372  T

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Target: scaffold0168 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 24143 - 24232
Alignment:
Q  83 agtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaaga 172  Q
    |||||||| |||||||||| |||||||||| |||| |||||||||||||||| | |||||||| || ||||| ||| | |||||| ||||    
T  24143 agtgctattgaaaataacagtattttagcacttatcaactctccccaacttaaatctttgtttgtcctcaaacaaatgccctaaataaga 24232  T

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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 3416 - 3492
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 145  Q
    ||||||||| ||||| |||||||||||||||| ||| ||| ||| |||| |||| || |||||||||||||||||||    
T  3416 aaaacaagttgataaatgctatggaaaataactataatttggcacttatcaactgtctccaacttagaactttgttt 3492  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 34744121 - 34744059
Alignment:
Q  47 tttttataattgatttctaccaaaaacaagtcgataagtgctatggaaaataacaatattttag 110  Q
    ||||||| ||||||||||  ||||| |||||| |||||||||||||||||||||||||||||||    
T  34744121 tttttatgattgatttcttgcaaaa-caagtcaataagtgctatggaaaataacaatattttag 34744059  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 24464849 - 24464770
Alignment:
Q  253 tgattcaaatagaattgtgcgggcaagtcttatgtataccactaaccgggtacaaaaatcatgaacataaaatttattcaa 333  Q
    |||||||||  ||||||||||| | |||||||||| ||||||||||  || || ||| ||||||||||||||||| |||||    
T  24464849 tgattcaaaatgaattgtgcggacgagtcttatgtctaccactaacatggaac-aaagtcatgaacataaaatttgttcaa 24464770  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 19865965 - 19866003
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattt 107  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19865965 aaaacaagtcgataagtgctatgtaatataacaatattt 19866003  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 24465006 - 24464934
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaacttt 141  Q
    ||||||||||||||| | || || ||||||| | || |||| || |||| ||||||||||| |||||||||||    
T  24465006 aaaacaagtcgataactactttgaaaaataatagtactttaacacttatcaactctccccatcttagaacttt 24464934  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 18477034 - 18477094
Alignment:
Q  114 ttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagata 174  Q
    |||| |||||||||||||||||| |||||||| |  ||||| |||||||||||||||||||    
T  18477034 ttatcaactctccccaacttagagctttgtttgtactcaaacaaaagtcctaaaaaagata 18477094  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 10282543 - 10282443
Alignment:
Q  72 acaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaag 171  Q
    |||||||||| | | ||||  |||||||||||| ||| ||| |||| |||||| ||||||||||| |||||||| || ||||| || | |||| ||||||    
T  10282543 acaagtcgattaatactataaaaaataacaataatttggcacttatcaactcttcccaacttagagctttgtttgtcctcaaacaataatcctcaaaaag 10282444  T
Q  172 a 172  Q
    |    
T  10282443 a 10282443  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 18757828 - 18757753
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgttt 145  Q
    |||||||||||||||||  |||||||||||||| || |||  || |||| || ||||||||||||| ||||||||||    
T  18757828 aaaacaagtcgataagtt-tatggaaaataacagtaatttgacacttattaattctccccaacttaaaactttgttt 18757753  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 16102691 - 16102641
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttataa 119  Q
    ||||||| |||||||||| |||| ||||||||||||||||| || ||||||    
T  16102691 aaaacaaatcgataagtgttatgaaaaataacaatattttaacacttataa 16102641  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 20488710 - 20488770
Alignment:
Q  114 ttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagata 174  Q
    |||| ||||| |||||||||||||||||||||||| ||||| ||||| ||| |||||||||    
T  20488710 ttatcaactccccccaacttagaactttgtttttcctcaaacaaaaggcctcaaaaagata 20488770  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 7857677 - 7857816
Alignment:
Q  78 cgataagtgctatggaaaataacaatattttagcatttataaactctccccaacttagaactttgtttttcatcaaataaaagtcctaaaaaagatacat 177  Q
    ||||||||| | ||||||||||||||| ||| ||| |||| |||||   |||||| |||||||||||| || | ||| ||||||||  ||||||||| ||    
T  7857677 cgataagtgttttggaaaataacaataatttggcacttatcaactcattccaactaagaactttgtttgtccttaaacaaaagtcc--aaaaagatatat 7857774  T
Q  178 tcgagtgaatgcaagaaaataaatcacaaggattttcagtga 219  Q
      || ||||||  ||||||| |  |||||||||||| |||||    
T  7857775 atgattgaatgtgagaaaatgatccacaaggatttttagtga 7857816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 17631327 - 17631235
Alignment:
Q  11 tatactaatttaaatgatatttgtatcaattaggcttttttata--attgatttctaccaaaaacaagtcgataagtgctatggaaaataaca 101  Q
    ||||||||| |||| |||||||||||||| | ||   |||||||  ||||||||||  ||||||||||||||||||| |||||| || |||||    
T  17631327 tatactaatataaacgatatttgtatcaacttgggggttttatatgattgatttcttacaaaaacaagtcgataagtactatggtaactaaca 17631235  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 20587552 - 20587600
Alignment:
Q  69 aaaacaagtcgataagtgctatggaaaataacaatattttagcatttat 117  Q
    |||||||||| ||| |||||||||||||||||| ||| |||||| ||||    
T  20587552 aaaacaagtcaatatgtgctatggaaaataacactatgttagcacttat 20587600  T

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