View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_22 (Length: 365)
Name: NF4568_high_22
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 26600574 - 26600434
Alignment:
| Q |
142 |
gaacaaaacctagacatcgtaagttgtagtattccggtcttcttgaaattaactgtctggccgttttttatcaacataatgttatatgtattgaagatat |
241 |
Q |
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| T |
26600574 |
gaacaaaacctagacatcgtaagttgtagtattccggtcttcttgaaattaactgtctggccgttttttatcaacataatgttatatgtattgaagatat |
26600475 |
T |
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| Q |
242 |
gaaactaatatttttataatttaccttcaatgaaaagaaat |
282 |
Q |
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| T |
26600474 |
gaaactagtatttttataatttaccttcaatgaaaagaaat |
26600434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 26601232 - 26601123
Alignment:
| Q |
21 |
gagttgttatttaaataagtatttatggatttttactaacagaaagtaaaagatatattttagagaccaatttattttgttgacaaaaagtaaatctttt |
120 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26601232 |
gagttgttatttaaata----tttatggatttttactaacagaaagtaaaagatatattttagagaccaatttattttgttgacaaaaagtaaatctttt |
26601137 |
T |
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| Q |
121 |
ggaaactaaataaa |
134 |
Q |
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| T |
26601136 |
ggaaactaaataaa |
26601123 |
T |
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