View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_high_23 (Length: 359)

Name: NF4568_high_23
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_high_23
NF4568_high_23
[»] chr4 (4 HSPs)
chr4 (26-303)||(16518542-16518807)
chr4 (304-339)||(29227130-29227165)
chr4 (303-339)||(26600085-26600121)
chr4 (305-341)||(21014144-21014180)
[»] chr2 (4 HSPs)
chr2 (303-341)||(37731086-37731124)
chr2 (304-341)||(11965940-11965977)
chr2 (304-341)||(37316702-37316739)
chr2 (303-339)||(2427885-2427921)
[»] chr8 (6 HSPs)
chr8 (304-341)||(1068753-1068790)
chr8 (304-341)||(34435624-34435661)
chr8 (304-339)||(33107754-33107789)
chr8 (304-341)||(15716863-15716900)
chr8 (304-341)||(44091033-44091070)
chr8 (304-336)||(12241224-12241256)
[»] chr7 (4 HSPs)
chr7 (304-341)||(15325527-15325564)
chr7 (303-341)||(2008718-2008756)
chr7 (304-339)||(33845191-33845226)
chr7 (307-339)||(43081780-43081812)
[»] chr5 (1 HSPs)
chr5 (305-341)||(21210965-21211001)
[»] chr1 (3 HSPs)
chr1 (301-341)||(38878785-38878825)
chr1 (304-339)||(40439727-40439762)
chr1 (304-341)||(27742756-27742793)
[»] scaffold0618 (1 HSPs)
scaffold0618 (304-341)||(8840-8877)
[»] chr6 (2 HSPs)
chr6 (304-341)||(33712467-33712504)
chr6 (307-341)||(18064980-18065014)
[»] chr3 (1 HSPs)
chr3 (308-341)||(32631450-32631483)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 16518542 - 16518807
Alignment:
Q  26 gatgctcaaattagggttttctaatgagtgggcggaactgctaggttttggtagcttagtgtgggcttggatcttaagcttcaaattggaggcccataac 125  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16518542 gatgctcaaactagggttttctaatgagtgggcggaactgctaggttttggtagcttagtgtgggcttggatcttaagcttcaaattggaggcccatatc 16518641  T
Q  126 actagtactagaaaattgctcttcccactttaaaaattgctcacttaaactgcaaagatatggttttatcctcaacaacagctaattgcgcaacggtcag 225  Q
    |||| |  ||||||||||||||| ||||||||||||||||||||  | |||  |||  |||| ||||| || |||| ||| ||||||    ||           
T  16518642 actacttttagaaaattgctctttccactttaaaaattgctcacccacactataaaattatgcttttacccccaacgacaactaatttatgaa------- 16518734  T
Q  226 tggtagacataagcatttataaatgtcaactaagacacaaattggtttgtctaagcacatctaacgcataaccacaat 303  Q
     |||||    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16518735 -ggtag----aagtatttataaatgtcaactaagacacaaattggtttgtctaagcacatgtaacgcataaccacaat 16518807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 29227130 - 29227165
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    ||||||||||||||||||||||||||||||||||||    
T  29227130 gagcaatgttatttgaacaacctttttatgtgacaa 29227165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 26600085 - 26600121
Alignment:
Q  303 tgagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26600085 tgagcaatgttatttgaacaacatttttatgtgacaa 26600121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 21014180 - 21014144
Alignment:
Q  305 agcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||||  ||||||||||    
T  21014180 agcaatgttatttgaacaaccttttattgtgacaact 21014144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 37731086 - 37731124
Alignment:
Q  303 tgagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37731086 tgagcaatgttatttgaacaacctttttatgtgacaact 37731124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 11965977 - 11965940
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11965977 gagcaatgttatttgaacaacctttttatgtgacaact 11965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 37316702 - 37316739
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  37316702 gagcaatgttatttgaacaacctttttctatgacaact 37316739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 2427885 - 2427921
Alignment:
Q  303 tgagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  2427885 tgagcaatgttatttgaacaaccattttttgtgacaa 2427921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 1068790 - 1068753
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1068790 gagcaatgttatttgaacaacctttttatgtgacaact 1068753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 34435624 - 34435661
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34435624 gagcaatgttatttgaacaacctttttatgtgacaact 34435661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 33107754 - 33107789
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    ||||||||||||||||||||||||||||||||||||    
T  33107754 gagcaatgttatttgaacaacctttttatgtgacaa 33107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 15716863 - 15716900
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15716863 gagcaatgttatttgaacaacttttttatgtgacaact 15716900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 44091070 - 44091033
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||||| |||||||||||    
T  44091070 gagcaatgttatttgaacaaccttttcatgtgacaact 44091033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 12241256 - 12241224
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtga 336  Q
    ||||||||||||||||||||| |||||||||||    
T  12241256 gagcaatgttatttgaacaacttttttatgtga 12241224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 15325527 - 15325564
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15325527 gagcaatgttatttgaacaacctttttatgtgacaact 15325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 2008718 - 2008756
Alignment:
Q  303 tgagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  2008718 tgagcaatgttatttgaacaaccattttatgtgacaact 2008756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 339
Target Start/End: Complemental strand, 33845226 - 33845191
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    |||||||||||||||||||||||||| |||||||||    
T  33845226 gagcaatgttatttgaacaaccttttcatgtgacaa 33845191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 43081780 - 43081812
Alignment:
Q  307 caatgttatttgaacaacctttttatgtgacaa 339  Q
    |||||||||||||||||| ||||||||||||||    
T  43081780 caatgttatttgaacaacatttttatgtgacaa 43081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 21211001 - 21210965
Alignment:
Q  305 agcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||||||||||||||||    
T  21211001 agcaatgttatttgaacaacctttttatgtgacaact 21210965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 38878785 - 38878825
Alignment:
Q  301 aatgagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  38878785 aatgagcaatgttatttgaacaacatttttatgtgacaact 38878825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 40439727 - 40439762
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaa 339  Q
    ||||||||||||||||||||||||||||||||||||    
T  40439727 gagcaatgttatttgaacaacctttttatgtgacaa 40439762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 27742793 - 27742756
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27742793 gagcaatgttatttgaacaacctttttatgtaacaact 27742756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 8840 - 8877
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||||||||||| |||||||||||    
T  8840 gagcaatgttatttgaacaaccttttcatgtgacaact 8877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 33712504 - 33712467
Alignment:
Q  304 gagcaatgttatttgaacaacctttttatgtgacaact 341  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33712504 gagcaatgttatttgaacaacctttttatgtaacaact 33712467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 18064980 - 18065014
Alignment:
Q  307 caatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||| ||||||||||||||||    
T  18064980 caatgttatttgaacaacttttttatgtgacaact 18065014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 32631450 - 32631483
Alignment:
Q  308 aatgttatttgaacaacctttttatgtgacaact 341  Q
    |||||||||||||||||| |||||||||||||||    
T  32631450 aatgttatttgaacaaccattttatgtgacaact 32631483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University