View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_28 (Length: 326)
Name: NF4568_high_28
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_28 |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 32683419 - 32683720
Alignment:
| Q |
15 |
acatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgttgaaggctgta |
114 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683419 |
acatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgttgaaggctgta |
32683517 |
T |
|
| Q |
115 |
aataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaagtgccaagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32683518 |
aataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaagtgccaagct |
32683617 |
T |
|
| Q |
215 |
cgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactatcgcaatgtgtcggtaatattatggttttgactcattctccagaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683618 |
cgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactatcgtaatgtgtcggtaatattatggttttgactcattctccagaat |
32683717 |
T |
|
| Q |
315 |
tat |
317 |
Q |
| |
|
||| |
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| T |
32683718 |
tat |
32683720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 32685129 - 32685382
Alignment:
| Q |
15 |
acatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgttgaaggctgta |
114 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685129 |
acatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgttgaaggctgta |
32685227 |
T |
|
| Q |
115 |
aataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaagtgccaagct |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32685228 |
aataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaagtgccaagct |
32685327 |
T |
|
| Q |
215 |
cgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685328 |
cgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
32685382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 33010825 - 33010662
Alignment:
| Q |
87 |
gttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtga |
186 |
Q |
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|
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| | ||| ||||||||||| |||||||||| ||||||||| |
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| T |
33010825 |
gttcaaataaaggatgttgaagg-tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtga |
33010727 |
T |
|
| Q |
187 |
gtgttagacacttgggaagtgccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtact |
252 |
Q |
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| |||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
33010726 |
--gatagatacttgggaagagccaagcttgcaaatcttggtctatgcgtgtttggttattatgtact |
33010662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 33010932 - 33010870
Alignment:
| Q |
15 |
acatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatcca |
77 |
Q |
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||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
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| T |
33010932 |
acatctaaggcagctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatcca |
33010870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 34925256 - 34925139
Alignment:
| Q |
156 |
aactatgttttgttttatccttaagttgtgagtgttagacacttggga-agtg----ccaagctcgcaaatctt-gtctatgcgtgtctggttattatgt |
249 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||| |||||| ||| |
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| T |
34925256 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
34925157 |
T |
|
| Q |
250 |
actgattcctatataact |
267 |
Q |
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||| ||||||||||||| |
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| T |
34925156 |
actatttcctatataact |
34925139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 33011205 - 33011259
Alignment:
| Q |
26 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
80 |
Q |
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|
|||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |
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| T |
33011205 |
agctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaa |
33011259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 32685388 - 32685467
Alignment:
| Q |
241 |
ttattatgtactgattcctatataactat---cgcaatgtgtcggtaatattatggttttgactcattctccagaattat |
317 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||||||| |||||||| ||| ||||| ||||||||||||||||| |
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| T |
32685388 |
ttattctgtactaattcctatataactattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaattat |
32685467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 28734759 - 28734811
Alignment:
| Q |
28 |
ctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
80 |
Q |
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|||||||||||||||||| | ||| ||||||||| ||||||| | |||||||| |
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| T |
28734759 |
ctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaa |
28734811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 1403 - 1336
Alignment:
| Q |
117 |
taaaattaggcagttgtgt--agagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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|
| T |
1403 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
1336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 2214 - 2281
Alignment:
| Q |
117 |
taaaattaggcagttgtg--tagagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
182 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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| T |
2214 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
2281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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