View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_high_3 (Length: 557)

Name: NF4568_high_3
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_high_3
NF4568_high_3
[»] chr3 (15 HSPs)
chr3 (13-557)||(18031277-18031821)
chr3 (224-461)||(27401318-27401555)
chr3 (234-542)||(26117123-26117428)
chr3 (234-366)||(18081285-18081417)
chr3 (234-530)||(26239399-26239692)
chr3 (234-542)||(26145127-26145432)
chr3 (240-309)||(26183797-26183866)
chr3 (240-309)||(26212404-26212473)
chr3 (377-470)||(27370330-27370423)
chr3 (234-301)||(26624398-26624465)
chr3 (234-289)||(18723482-18723537)
chr3 (234-299)||(27370190-27370255)
chr3 (234-289)||(27343892-27343947)
chr3 (377-472)||(28079459-28079554)
chr3 (377-542)||(28178082-28178247)
[»] scaffold0854 (2 HSPs)
scaffold0854 (377-542)||(4284-4449)
scaffold0854 (234-289)||(4534-4589)
[»] scaffold1344 (1 HSPs)
scaffold1344 (234-289)||(579-634)
[»] scaffold0043 (1 HSPs)
scaffold0043 (234-289)||(73306-73361)
[»] chr7 (1 HSPs)
chr7 (234-301)||(8694815-8694882)


Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Complemental strand, 18031821 - 18031277
Alignment:
13 gcatcacagacactgaatacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18031821 gcatcacagacactgaatacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattga 18031722  T
113 tgaacttgttaaagatgaacctggtgaacattacatttcagaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattctt 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18031721 tgaacttgttaaagatgaacctggtgaacattacatttcacaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattctt 18031622  T
213 cggcgatgtcaaattaacagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18031621 cggcgatgtcaaattaacagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatg 18031522  T
313 atacagaactgaagttactcatagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
18031521 atacagaactgaagttactcatagacactaaacatattgattctcaagtaccaaatgtttttttctccaagttaattgtactaaagctcaagggtatgaa 18031422  T
413 gaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgttt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18031421 gaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgttt 18031322  T
513 aaatgcagcctgaatctctgcaagctaaaggaactgactctagaa 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
18031321 aaatgcagcctgaatctctgcaagctaaaggaactgactctagaa 18031277  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 461
Target Start/End: Complemental strand, 27401555 - 27401318
Alignment:
224 aattaacagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactg 323  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| || |||||||| ||  |   | | |||||||     
27401555 aattaacagtggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaacta 27401456  T
324 aagttactcatagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaag 423  Q
     |||  ||||||||||||||||||||||||||||||||||||||||       |||||||||  |||||||| |||||      ||| | || |||||||    
27401455 cagtgcctcatagacactaaacatattgattctcaagtaccaaatgttgtcttctccaagttggttgtactagagctctttaaaatggataagttggaag 27401356  T
424 aattgtgcaacggttcaatcttcttggactctctgaac 461  Q
    |||||||||||||||| |||| | ||||||||||||||    
27401355 aattgtgcaacggttccatctccatggactctctgaac 27401318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 234 - 542
Target Start/End: Complemental strand, 26117428 - 26117123
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 333  Q
    ||||||| |||||||||||||||||| |||||||||||  | ||||||||||||||  ||||||||   |||| |||   | || ||||  |||  ||      
26117428 ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgccttg 26117329  T
334 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 433  Q
    ||||||||||||||||| ||||||||||||||| ||       |||||||||  ||||||||||||| ||| | ||| |    ||||||||||| |||||    
26117328 tagacactaaacatattaattctcaagtaccaattgtttt---ctccaagttggttgtactaaagcttaagagaatggaagctttggaagaattatgcaa 26117232  T
434 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgc 533  Q
     ||| | |||| ||| |||||  |||||||||||||| | |||| | | || |||||||| | ||| |||||| |||||||||||||||| |||||| ||    
26117231 tggtcccatctcctttgactcaatgaacaatttagaggagctatatgtgaacgagtgtaaaaatttgcaaagcttgtttaaatgcagcctaaatctcagc 26117132  T
534 aagctaaag 542  Q
    || ||||||    
26117131 aatctaaag 26117123  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 18081417 - 18081285
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 333  Q
    ||||||||||||||||||||||| || |||||||||||  | ||||||||||||||  |||||||||| ||| || ||||| || ||||  |||  ||||    
18081417 ggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctca 18081318  T
334 tagacactaaacatattgattctcaagtaccaa 366  Q
    || ||| | ||||||||||||||||||||||||    
18081317 tatacattgaacatattgattctcaagtaccaa 18081285  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 530
Target Start/End: Complemental strand, 26239692 - 26239399
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 333  Q
    ||||||| |||||||||||||||||| |||||||||||  | ||||||||||||||  || |||||||  || ||||   | || ||||  |||  ||      
26239692 ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtaccttg 26239593  T
334 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 433  Q
    ||||||||||||||||| ||||||||||||||| ||       |||||||||  |||||||||| ||  || | ||| |    ||||||||||| |||||    
26239592 tagacactaaacatattaattctcaagtaccaattgtttt---ctccaagttggttgtactaaatcttgagagaatggaagctttggaagaattatgcaa 26239496  T
434 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctc 530  Q
     ||| | |||  ||| |||||   ||||||||||||||| |||||||||||||||||| | | ||| | |||| |||||||||||||||| ||||||    
26239495 tggtcccatcgcctttgactcaacgaacaatttagagaagctatctatcaaggagtgtgaaaatttgcgaagcttgtttaaatgcagcctaaatctc 26239399  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 542
Target Start/End: Complemental strand, 26145432 - 26145127
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 333  Q
    ||||| |||||||||||||| |||||||||||||||||  | ||||||||||||||  ||||||||||  ||  |||   | || ||||  |||  ||      
26145432 ggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgcctag 26145333  T
334 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 433  Q
    ||||||||||||||||| ||||||||||||||| ||       ||| |||||  |||||||||||||  || | ||| |    ||||||||||| |||||    
26145332 tagacactaaacatattaattctcaagtaccaattg---ttttctctaagttggttgtactaaagcttgagagaatggaagctttggaagaattatgcaa 26145236  T
434 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgc 533  Q
     ||| | |||| ||| |||||  |||||| ||||||| | || | ||| ||||||||| | | ||| |||||| |||||||||||||||| |||||| ||    
26145235 tggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaaatgcagcctaaatctcagc 26145136  T
534 aagctaaag 542  Q
    || ||||||    
26145135 aatctaaag 26145127  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 26183866 - 26183797
Alignment:
240 agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag 309  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||  |||||||||| |||||||    
26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaag 26183797  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 26212473 - 26212404
Alignment:
240 agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag 309  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||  |||||||||| |||||||    
26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaag 26212404  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 470
Target Start/End: Original strand, 27370330 - 27370423
Alignment:
377 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagag 470  Q
    |||||||||  |||||||||| |||||||  |||||||| ||||||||||| ||||| ||| | |||||||  |||||| ||||||||||||||    
27370330 ctccaagttggttgtactaaaactcaaggaaatgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagag 27370423  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 26624398 - 26624465
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca 301  Q
    |||||||||||||||||||| ||||| ||||||||||||   |||||||||||| || ||||||||||    
26624398 ggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttca 26624465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 18723537 - 18723482
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 289  Q
    |||||||||||||||||||| | ||| ||| ||||||| |||||||||||||||||    
18723537 ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct 18723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 27370190 - 27370255
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagctt 299  Q
    |||||||||||||||||||| | |||  |||||||||| |||||||||||| ||||  ||||||||    
27370190 ggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 27343892 - 27343947
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 289  Q
    |||||||||||||||||||| | |||  ||||||| || |||||||||||||||||    
27343892 ggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatct 27343947  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 28079459 - 28079554
Alignment:
377 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaa 472  Q
    |||||||||  |||||||||||||||| || ||| | || ||||||||||||| ||| ||| |  | | ||| ||||||||||||| |||||||||    
28079459 ctccaagttggttgtactaaagctcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaa 28079554  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 542
Target Start/End: Original strand, 28178082 - 28178247
Alignment:
377 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatcta 476  Q
    |||||||||  |||||||||||||||| || ||| | || || |||||||||| ||| ||| |  | | ||| ||||||||||||| ||||||||| ||     
28178082 ctccaagttggttgtactaaagctcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctg 28178181  T
477 tctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaag 542  Q
    || ||||| || |||||   |||  ||||| | ||||| |||| ||| || |||||||| ||||||    
28178182 tccatcaatgaatgtaaacatttaaaaagcttatttaagtgcaacctaaacctctgcaatctaaag 28178247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 542
Target Start/End: Complemental strand, 4449 - 4284
Alignment:
377 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatcta 476  Q
    |||||||||  |||||||| | |||||||  |||||||| ||||||||||| ||||| ||| | |||||||| |||||| |||||||||||||| | |||    
4449 ctccaagttggttgtactagaactcaaggaaatgaagaatttggaagaattatgcaatggtcccatcttctttgactctatgaacaatttagaggagcta 4350  T
477 tctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaag 542  Q
     |||||  | | |||   ||||| | |||| |||||||||||||| | ||| ||||||| ||||||    
4349 actatcttgaaatgtggaattttgcgaagcttgtttaaatgcagcataaatttctgcaatctaaag 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 4589 - 4534
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 289  Q
    |||||||||||||||||||| | ||| ||||||||||| |||||||||||| ||||    
4589 ggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatct 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 579 - 634
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 289  Q
    |||||||||||||||||||| | |||  |||||||||| |||||||||||||||||    
579 ggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatct 634  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 73361 - 73306
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 289  Q
    |||||||||||||||||||| | ||| ||| ||||||| |||||||||||||||||    
73361 ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct 73306  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 8694882 - 8694815
Alignment:
234 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca 301  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  ||||||||||    
8694882 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttca 8694815  T

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