View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_32 (Length: 305)
Name: NF4568_high_32
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 27522223 - 27522495
Alignment:
| Q |
19 |
taactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaataattaataatgcatatgttatagaaatgttacccaccccatgttcaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27522223 |
taactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaat---taataatgcataggttatagaaatgttacccaccccatgttcaaa |
27522319 |
T |
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| Q |
119 |
gttggaagttgctgctgtagtaagtaatttggattaactccatgatggtttgggtgctcccattgtgcctgctgctgagctgcaatcttttccttctcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522320 |
gttggaagttgctgctgtagtaagtaatttggattaactccatgatggtttgggtgctcccattgtgcctgctgctgagctgcaatcttttccttctcct |
27522419 |
T |
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| Q |
219 |
tgatctataattatttttgaaaatgtgtcatggaaaataataaagaatcttagccttgattaattattcatctcat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
27522420 |
tgatctataattatttttgaaaatgtgtcatggaaaacaataaagaatcttagccttgattaattattcatatcat |
27522495 |
T |
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