View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_36 (Length: 274)
Name: NF4568_high_36
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 15449892 - 15449644
Alignment:
| Q |
17 |
aaacctaccactatcacatcgatcatcaatgacctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449892 |
aaacctaccactatcacatcgatcatcaatgaactatttaccgcctgaaacttctaagggttgatatgaactcatctccttactatcaaccatatatgaa |
15449793 |
T |
|
| Q |
117 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449792 |
tcctcttcccatgaactatagaccttgtgaatataatttccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
15449693 |
T |
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| Q |
217 |
tctcacctaaatactcacaaataaaatttccagaaggaattgcattctc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449692 |
tctcacctaaatactcacaaataaaatttccagaaggaattgcattctc |
15449644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 15488769 - 15488516
Alignment:
| Q |
17 |
aaacctaccactatcacatcgatcatcaatgacctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaa |
116 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15488769 |
aaacctaccactatcacatcgatcatcaacgccctctttaccgcccgaagcttctaagggttgatatgaactcatctccttactatcaaccacatatgaa |
15488670 |
T |
|
| Q |
117 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15488669 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
15488570 |
T |
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| Q |
217 |
tctcacctaaatactcacaa---ataaaatttccagaaggaattgcattctctg |
267 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15488569 |
tctcacctaaatactcacaaataataaaatttccagaaggaattgcattctctg |
15488516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 15430374 - 15430121
Alignment:
| Q |
17 |
aaacctaccactatcacatcgatcatcaatgacctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaa |
116 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
15430374 |
aaacctaccactatcacatcgatcatcaacgccctctttaccgcccgaagcttctaagggttgatatgaattcatctccttactatcaaccacatatgaa |
15430275 |
T |
|
| Q |
117 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430274 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
15430175 |
T |
|
| Q |
217 |
tctcacctaaatactcacaa---ataaaatttccagaaggaattgcattctctg |
267 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15430174 |
tctcacctaaatactcacaaataataaaatttccagaaggaattgcattctctg |
15430121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 16943463 - 16943213
Alignment:
| Q |
17 |
aaacctaccactatcacatcgatcatcaatgacctctttaccgcctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16943463 |
aaacctaccactatcacatcgatcatcaatgacctctttactgcctgaagcttctacgggttgatatgaactcatctccttactatcaaccatatatgaa |
16943364 |
T |
|
| Q |
117 |
tcctcttcccatgaactatagaccttgtgaatataattgccaatattaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataa |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
16943363 |
tcctcttcccttgaactatagaccttgtgaatataatcgacaatattaaataattactcatcatcatcaactatcttcaaagcttcctcatcttcaataa |
16943264 |
T |
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| Q |
217 |
tctcacctaaatactcacaaataaaatttccagaaggaattgcattctctg |
267 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16943263 |
tctcacctatatactcacaaataaaatttccagaaggaattgcattctctg |
16943213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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