View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_48 (Length: 251)
Name: NF4568_high_48
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 27122803 - 27122594
Alignment:
| Q |
33 |
atatatgaaggattaattacatatgaatagaagacaaacggacaatatgttgcaccgttggatctttttggtgtatatataatcatagaaacatagtttt |
132 |
Q |
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|||||| | |||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27122803 |
atatataagggattaattacatatgaaaagaagacaaacagacaatatgttgcacagttagatctttttggtgtatatataatcatagaaacatagtttt |
27122704 |
T |
|
| Q |
133 |
gtgagatacaatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27122703 |
gtgagatacaatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacct |
27122604 |
T |
|
| Q |
233 |
cgagtataat |
242 |
Q |
| |
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||||| |||| |
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| T |
27122603 |
cgagtgtaat |
27122594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27122887 - 27122852
Alignment:
| Q |
1 |
tcaattagttatggtgtatatactcatatattatat |
36 |
Q |
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| T |
27122887 |
tcaattagttatggtgtatatactcatatattatat |
27122852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 31150368 - 31150325
Alignment:
| Q |
32 |
tatatatgaaggattaattacatatgaatagaagacaaacggac |
75 |
Q |
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|
| T |
31150368 |
tatatatcaaggattaattacacatgaatagaagacaagcggac |
31150325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 2601677 - 2601723
Alignment:
| Q |
31 |
ttatatatgaaggattaattacatatgaatagaagacaaacggacaa |
77 |
Q |
| |
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|
| T |
2601677 |
ttatatataaagtattaattacacatgaatagaagacaaacggacaa |
2601723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 15832911 - 15832978
Alignment:
| Q |
32 |
tatatatgaaggattaattacatatgaatagaagacaaacggacaatatgttgcaccgttggatcttt |
99 |
Q |
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||||||| |||||||||||||| ||||||| ||||||| || |||||| ||||| || || ||||||| |
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|
| T |
15832911 |
tatatatcaaggattaattacagatgaataaaagacaagcgaacaataagttgcgccattagatcttt |
15832978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 15809898 - 15809951
Alignment:
| Q |
32 |
tatatatgaaggattaattacatatgaatagaagacaaacggacaatatgttgc |
85 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||| || |||||| ||||| |
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|
| T |
15809898 |
tatatatcaaggattaattacagatgaataaaagacaagcgaacaataagttgc |
15809951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 24113424 - 24113464
Alignment:
| Q |
32 |
tatatatgaaggattaattacatatgaatagaagacaaacg |
72 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| |||||| |
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|
| T |
24113424 |
tatatatcaaggataaattacatatgaatagaaggcaaacg |
24113464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 24016183 - 24016221
Alignment:
| Q |
31 |
ttatatatgaaggattaattacatatgaatagaagacaa |
69 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
24016183 |
ttatatattaaggattaatcacatatgaatagaagacaa |
24016221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 53098267 - 53098309
Alignment:
| Q |
29 |
tattatatatgaaggattaattacatatgaatagaagacaaac |
71 |
Q |
| |
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|||||||||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
53098267 |
tattatatatcaagaattaattacacatgaatagaagacaaac |
53098309 |
T |
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