View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_49 (Length: 250)
Name: NF4568_high_49
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 48097065 - 48097245
Alignment:
| Q |
3 |
ggggtgcaaacatttttgacttgcaaaatttagnnnnnnnnnnctcataaaaaagttgcacattttagtcctccttcgtctacataaatgatttatttat |
102 |
Q |
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| T |
48097065 |
ggggtgcaaacatatttgacttgcaaaatttagttttttttttctcataaaaaagttgcacattttagtcctccttcgtctacataaatgatttatttat |
48097164 |
T |
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| Q |
103 |
gaggaggtctagaatttgattatggaacgaatgagattaaaatcacatgttgaataaaagaggtgtaaaaaaccatttcgg |
183 |
Q |
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| T |
48097165 |
gaggaggtctagaatttgattatggaacgaatgagattaaaatcacatgttgaataaaagaggtgtaaaaaaccatttcgg |
48097245 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 12016590 - 12016635
Alignment:
| Q |
58 |
ttgcacattttagtcctccttcgtctacataaatgatttatttatg |
103 |
Q |
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| T |
12016590 |
ttgcacattttagtcctctttcgtctacacaaatgaattatttatg |
12016635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 30256244 - 30256302
Alignment:
| Q |
46 |
ctcataaaaaagttg-cacattttagtcctccttcgtctacataaatgatttatttatg |
103 |
Q |
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| T |
30256244 |
ctcataaaaaagtttacacgtttttgtcatcattcgtctacataaatgatttatttatg |
30256302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 29969202 - 29969157
Alignment:
| Q |
112 |
tagaatttgattatggaacgaatgagattaaaatcacatgttgaat |
157 |
Q |
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| T |
29969202 |
tagaattcgattatggaacgaaagagatgaatatcacatgttgaat |
29969157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 38576911 - 38576959
Alignment:
| Q |
116 |
atttgattatggaacgaatgagattaaaatcacatgttgaataaaagag |
164 |
Q |
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| T |
38576911 |
atttgattatggtacgaaagagatggaaatcacatgttgaatgaaagag |
38576959 |
T |
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