View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_high_50 (Length: 250)

Name: NF4568_high_50
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_high_50
NF4568_high_50
[»] chr8 (2 HSPs)
chr8 (18-240)||(13519507-13519729)
chr8 (18-240)||(13609042-13609264)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 13519729 - 13519507
Alignment:
Q  18 gtttgatgggatgcataagagagagtgtgtgtgatactccaataaaaatctatctcctgatgatagacaaccttgcctgcaagtctaatctgactctaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13519729 gtttgatgggatgcataagagagagtgtgtgtgatactccaataaaaatctatctcctgatgatagacaaccttgcctgcaagtctaatctgactctaac 13519630  T
Q  118 ctttgcctttccctttcacttttaatttctctcattgccttgcagagggtaatttcttgacttttgcatacactttatttcctttattcttttcaccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13519629 ctttgcctttccctttcacttttaatttctctcattgccttgcagagggtaatttcttgacttttgcatacactttatttcctttattcttttcaccttc 13519530  T
Q  218 aatcttacttaaaacaacctatg 240  Q
    |||||||||||||||||||||||    
T  13519529 aatcttacttaaaacaacctatg 13519507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 13609264 - 13609042
Alignment:
Q  18 gtttgatgggatgcataagagagagtgtgtgtgatactccaataaaaatctatctcctgatgatagacaaccttgcctgcaagtctaatctgactctaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609264 gtttgatgggatgcataagagagagtgtgtgtgatactccaataaaaatctatctcctgatgatagacaaccttgcctgcaagtctaatctgactctaac 13609165  T
Q  118 ctttgcctttccctttcacttttaatttctctcattgccttgcagagggtaatttcttgacttttgcatacactttatttcctttattcttttcaccttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609164 ctttgcctttccctttcacttttaatttctctcattgccttgcagagggtaatttcttgacttttgcatacactttatttcctttattcttttcaccttc 13609065  T
Q  218 aatcttacttaaaacaacctatg 240  Q
    |||||||||||||||||||||||    
T  13609064 aatcttacttaaaacaacctatg 13609042  T

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