View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568_high_55 (Length: 249)
Name: NF4568_high_55
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 58 - 240
Target Start/End: Original strand, 35752930 - 35753117
Alignment:
| Q |
58 |
ttttacacatgcatttttgctgataatttgtaaaatatcttcataaatatttacaa-----atttgattgaatgtatgtgtaaaaatatattaaactgtc |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35752930 |
ttttacacatgcaattttgctgataatttgtaaaatatcttcataaatatttacaagtgtaatttgattgaatgtatgtgtaaaaatatattaaactgtc |
35753029 |
T |
|
| Q |
153 |
attgtatacaaattaaatcgtttttaaataaagaatgtaaaaattaaagtgacattgatagtcagttaaaaaacggtccaagaataat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35753030 |
attgtatacaaattaaatcgtttttaaataaagaatgtaaaaattaaagtgacattgatagtcagttaaaaaacggtccaagaataat |
35753117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35752827 - 35752883
Alignment:
| Q |
1 |
caagagaaaatttgaatcttttacgcaatcaaactattcaaattttccttcaaactc |
57 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35752827 |
caagataaaatttaaatcttttacgcaatcaaactattccaattttccttcaaactc |
35752883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 7352153 - 7352095
Alignment:
| Q |
112 |
aaatttgattgaatgtatgtgtaaaaatatattaaactgtcattgtatacaaattaaat |
170 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| ||| ||||||| |||||||||||||||| |
|
|
| T |
7352153 |
aaatttgattgaatgtctgtataaaactattttacactgtcactgtatacaaattaaat |
7352095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University