View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_57 (Length: 246)
Name: NF4568_high_57
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_57 |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17801696 - 17801925
Alignment:
| Q |
1 |
ctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtgaactcacttctagaagctgaatcaaatgagggggtccacatggtggg |
100 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |
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| T |
17801696 |
ctttacatgttgccaaataccctattggtttagagtctcgagtgcaaaaagtgaactcacttctagaagttgaatcaaatgagggggttcgcatggtggg |
17801795 |
T |
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| Q |
101 |
gatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaatttgatagtttctgttttcttggtgatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
17801796 |
gatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaatttgatagtctttgttttcttggtgatatt |
17801895 |
T |
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| Q |
201 |
agagaaaattcactgaagtgtgggttggta |
230 |
Q |
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||||||||||| |||| ||||||||||| |
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| T |
17801896 |
agagaaaattcgaagaagcgtgggttggta |
17801925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17790747 - 17790977
Alignment:
| Q |
1 |
ctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtgaactcacttctagaagctgaatcaaatgagggggtccacatggtggg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17790747 |
ctttacatgttgctaaataccctgttgggttagagtctcgagtggaaaaagtgaactcgcttctagaagttgaatcaaatgagggggttcacatggtggg |
17790846 |
T |
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| Q |
101 |
gatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaatttgatagtttctgttttcttggtgatatt |
200 |
Q |
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| T |
17790847 |
gatttatggaatgggtgggttaggtaaaacaacacttgcatgtgctgtatacaattgcattgctgatcaatttgatagtctttgttttcttgctaatgtt |
17790946 |
T |
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| Q |
201 |
agagaaaattcactgaagtgtgggttggtac |
231 |
Q |
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| T |
17790947 |
agagaaaattcaatgaagcatgggttggtac |
17790977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 17784473 - 17784633
Alignment:
| Q |
71 |
tgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaa |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17784473 |
tgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggtcaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaa |
17784572 |
T |
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| Q |
171 |
tttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtac |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17784573 |
tttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtac |
17784633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17817632 - 17817862
Alignment:
| Q |
1 |
ctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtgaactcacttctagaagctgaatcaaatgagggggtccacatggtggg |
100 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||||| || | ||||| || |
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| T |
17817632 |
ctttacatgttgctaaataccatgttgggttagagtctcgagtgcaaaaagtgaactcgcttctagaagttgaatcagatgagaaagttaaaatggtagg |
17817731 |
T |
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| Q |
101 |
gatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaatttgatagtttctgttttcttggtgatatt |
200 |
Q |
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||||| ||| ||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| || |
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| T |
17817732 |
gatttttggtatgggtgggttgggtaaaacagcacttgcatgtgctgtatacaattgcattgctgatcaatttgatagtctttgttttcttgctgatgtt |
17817831 |
T |
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| Q |
201 |
agagaaaattcactgaagtgtgggttggtac |
231 |
Q |
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|||||||||||| |||| ||||||||||| |
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| T |
17817832 |
agagaaaattcaaagaagcatgggttggtac |
17817862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16440692 - 16440753
Alignment:
| Q |
1 |
ctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtgaactcactt |
62 |
Q |
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|||||||||||||||| |||||| |||| || ||||||||||||| |||| ||||||||| |
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| T |
16440692 |
ctttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcactt |
16440753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 26656605 - 26656646
Alignment:
| Q |
2 |
tttacatgttgctaaataccctattgggttagagtctcgagt |
43 |
Q |
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|||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26656605 |
tttacatgttgccaaataccctgttggattagagtctcgagt |
26656646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 26762576 - 26762617
Alignment:
| Q |
2 |
tttacatgttgctaaataccctattgggttagagtctcgagt |
43 |
Q |
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|||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26762576 |
tttacatgttgccaaataccctgttggattagagtctcgagt |
26762617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 29843444 - 29843392
Alignment:
| Q |
87 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
139 |
Q |
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||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
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| T |
29843444 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
29843392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 29845921 - 29845869
Alignment:
| Q |
87 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
139 |
Q |
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||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
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| T |
29845921 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
29845869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 2126 - 2074
Alignment:
| Q |
87 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
139 |
Q |
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||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
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| T |
2126 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
2074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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