View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_64 (Length: 239)
Name: NF4568_high_64
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_64 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 4144898 - 4145113
Alignment:
| Q |
24 |
ttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttatt |
123 |
Q |
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| T |
4144898 |
ttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttatt |
4144997 |
T |
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| Q |
124 |
cttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatca |
223 |
Q |
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| T |
4144998 |
cttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatca |
4145097 |
T |
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| Q |
224 |
tcgtcgacacctaaac |
239 |
Q |
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|||||||||||||||| |
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| T |
4145098 |
tcgtcgacacctaaac |
4145113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 4134089 - 4134311
Alignment:
| Q |
17 |
caaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
4134089 |
caaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatccacctcaagtctaaaatgttcct |
4134188 |
T |
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| Q |
117 |
ttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggt |
216 |
Q |
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| T |
4134189 |
ttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggt |
4134288 |
T |
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| Q |
217 |
tccatcatcgtcgacacctaaac |
239 |
Q |
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| T |
4134289 |
tccatcatcgtcgacacctaaac |
4134311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 4123561 - 4123751
Alignment:
| Q |
34 |
agaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcttatactca |
133 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
4123561 |
agaattatcacagttaccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaaatctaagaagttcctttttattcatatactca |
4123660 |
T |
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| Q |
134 |
atcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcat |
224 |
Q |
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| T |
4123661 |
accaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataagtagttccatcat |
4123751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 4152901 - 4153100
Alignment:
| Q |
24 |
ttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttatt |
123 |
Q |
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|||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4152901 |
ttggcacagtagaattatcacagttaccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttatt |
4153000 |
T |
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| Q |
124 |
cttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatca |
223 |
Q |
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| T |
4153001 |
catatactcaatcaacttgagtgttccatgcggtgtcaatgagagaattccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatca |
4153100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 4163247 - 4163452
Alignment:
| Q |
17 |
caaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaagttcct |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| | || ||||| |
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| T |
4163247 |
caaatatttggtacactagaaatatcacaatttccaaatggcccacattttccataaaaatcacactcgttttgactaaccgtaagtgatagaaattcct |
4163346 |
T |
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| Q |
117 |
ttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggt |
216 |
Q |
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| T |
4163347 |
tattattcaaaaactcaaccaacttaagtgttccatttggtgtcaatgagagaattccaaacatagctttgacggcgaaatcataagttagataagtagt |
4163446 |
T |
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| Q |
217 |
tccatc |
222 |
Q |
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|||||| |
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| T |
4163447 |
tccatc |
4163452 |
T |
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