View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568_high_67 (Length: 238)
Name: NF4568_high_67
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_67 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 48096648 - 48096541
Alignment:
| Q |
1 |
tctttttatatagacatgatcactgtctataatgacaattgacc------gtaaggactccgcttatactgc---aagaaggtttgatattggttgaagt |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48096648 |
tctttttatatagacatgatcactgtctataatgacaattgaccgtaaccgtaaggactccgcttatactgcaagaagaaggtttgatattggttgaagt |
48096549 |
T |
|
| Q |
92 |
ttcttgta |
99 |
Q |
| |
|
|||||||| |
|
|
| T |
48096548 |
ttcttgta |
48096541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 48096477 - 48096425
Alignment:
| Q |
163 |
ctccagctggatggatactccattactattgctaatgctaaatgagtagtggtcaaaac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48096477 |
ctccagctggatggatactccattactattg------ctaaatgagtagtggtcaaaac |
48096425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 48096513 - 48096483
Alignment:
| Q |
111 |
gctgaaccgaccagcattacagatcctctct |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48096513 |
gctgaaccgaccagcattacagatcctctct |
48096483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 39882940 - 39882982
Alignment:
| Q |
98 |
taacctcatctttgctgaaccgaccagcattacagatcctctc |
140 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39882940 |
taacctcatcttcgctgaaccgaccagcattacagatcctctc |
39882982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University