View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_75 (Length: 219)
Name: NF4568_high_75
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_75 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3451291 - 3451075
Alignment:
| Q |
1 |
tttttgatagagaaacaaaaagcagtaatttaattcttactcgttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatgta |
100 |
Q |
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| T |
3451291 |
tttttgatagagaaacaaaaagcagtaatttaattcttactcgttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatgta |
3451192 |
T |
|
| Q |
101 |
atctttttgaggttcaggaggttttgagtcactcttgttctgtttttcttcccctgcatttgtagtaccttctttggtctcttcctccatattcctgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
3451191 |
atctttttgaggttcaggaggttttgagtcactcttgttctgtttttcttcccctgcatttggtgtaccttctttgatctcttcctccatattcctgaca |
3451092 |
T |
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| Q |
201 |
ccattttcatctctctc |
217 |
Q |
| |
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|||||||||| |||||| |
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| T |
3451091 |
ccattttcatttctctc |
3451075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 26002992 - 26003060
Alignment:
| Q |
37 |
ttactcgttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatgtaatctt |
105 |
Q |
| |
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|||| ||||||||||||||||| || |||||||||||||| ||||| |||| ||||| |||||||||| |
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| T |
26002992 |
ttacacgttctgcaagactgtggctatcagtagcttgaccccttctagctcgaacatggatgtaatctt |
26003060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 18810399 - 18810283
Alignment:
| Q |
32 |
aattcttactcgttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatgtaatctttttgaggttcaggaggttttgagtca |
131 |
Q |
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| T |
18810399 |
aattcttactctttctgcaagactatggctatcagtagcttgacctcttcttgctctgacatgaatgtaatcctttggagcctcaggaggttttgaattg |
18810300 |
T |
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| Q |
132 |
ctcttgttctgtttttc |
148 |
Q |
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||||| ||||||||||| |
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| T |
18810299 |
ctcttattctgtttttc |
18810283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 31420830 - 31420778
Alignment:
| Q |
44 |
ttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaa |
96 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
31420830 |
ttctgctagactgtgactatcagtagcttgacctcttcttgctctaacatgaa |
31420778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 4803292 - 4803346
Alignment:
| Q |
44 |
ttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatg |
98 |
Q |
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| T |
4803292 |
ttctgcaagactgtgactgtttgtggcttgacctcttctagctctcacatgaatg |
4803346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 16270389 - 16270457
Alignment:
| Q |
38 |
tactcgttctgcaagactgtgactgtcagtagcttgacctcttcttgctctgacatgaatgtaatcttt |
106 |
Q |
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||||| |||||||||||| || || |||||||||||||| ||||| |||| |||||| ||||| ||||| |
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| T |
16270389 |
tactctttctgcaagactatggctatcagtagcttgaccccttctagctcggacatggatgtagtcttt |
16270457 |
T |
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