View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_high_78 (Length: 211)
Name: NF4568_high_78
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_high_78 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 45729437 - 45729227
Alignment:
| Q |
1 |
ataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatg |
100 |
Q |
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| T |
45729437 |
ataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatg |
45729338 |
T |
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| Q |
101 |
agattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattat |
200 |
Q |
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| T |
45729337 |
agattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattat |
45729238 |
T |
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| Q |
201 |
gaggggagcac |
211 |
Q |
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||||||||||| |
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| T |
45729237 |
gaggggagcac |
45729227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 45725248 - 45725042
Alignment:
| Q |
1 |
ataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatg |
100 |
Q |
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||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| ||| | | || || ||||| |||| |||||||| |
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| T |
45725248 |
ataggtggtttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatg |
45725149 |
T |
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| Q |
101 |
agattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725148 |
agattgtgaggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattat |
45725049 |
T |
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| Q |
201 |
gagggga |
207 |
Q |
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|||||| |
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| T |
45725048 |
tagggga |
45725042 |
T |
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