View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_low_10 (Length: 459)

Name: NF4568_low_10
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_low_10
NF4568_low_10
[»] chr4 (5 HSPs)
chr4 (10-243)||(1064703-1064932)
chr4 (243-444)||(1069044-1069242)
chr4 (236-429)||(32158541-32158735)
chr4 (12-86)||(36103348-36103422)
chr4 (18-52)||(6830878-6830912)
[»] chr1 (3 HSPs)
chr1 (12-100)||(35500779-35500867)
chr1 (25-94)||(9958203-9958272)
chr1 (25-94)||(32177570-32177639)
[»] chr7 (2 HSPs)
chr7 (12-94)||(12380851-12380933)
chr7 (12-86)||(23100271-23100345)
[»] chr3 (3 HSPs)
chr3 (12-94)||(1418593-1418675)
chr3 (12-94)||(30378492-30378574)
chr3 (32-86)||(43811018-43811072)
[»] chr2 (5 HSPs)
chr2 (12-94)||(18581349-18581431)
chr2 (12-94)||(38698380-38698462)
chr2 (12-86)||(13072291-13072365)
chr2 (20-94)||(5276383-5276457)
chr2 (25-94)||(21206088-21206157)
[»] chr8 (1 HSPs)
chr8 (267-320)||(11435630-11435683)
[»] chr5 (2 HSPs)
chr5 (25-94)||(41870989-41871058)
chr5 (236-302)||(22414172-22414238)
[»] scaffold0552 (1 HSPs)
scaffold0552 (18-52)||(10380-10414)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 1064703 - 1064932
Alignment:
Q  10 tattctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatattaattatcttttccaa 109  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1064703 tattccccttcatagtttcttcttgcaagtgtttattaattgtcttatttttttctaatcttattctcaattcattccaaatattaattatcttttccaa 1064802  T
Q  110 ttcattccaatcatgttcattgtgatctatgcaaagatgttttttattcattatcttttccaattatg--tttgtgtt-----tcattatgagataaacc 202  Q
    |||||||||||||||||||||||||  ||||         ||||||||||||||||||||||||||||  ||||||||     |||||||||||||||||    
T  1064803 ttcattccaatcatgttcattgtga--tatg---------tttttattcattatcttttccaattatgtttttgtgtttaagctcattatgagataaacc 1064891  T
Q  203 acttttatgggtgaggaatgaggatgttataaatataaata 243  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1064892 acttttatgggagaggaatgaggatgttataaatataaata 1064932  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 243 - 444
Target Start/End: Original strand, 1069044 - 1069242
Alignment:
Q  243 atgtttgcatgttaattttgttagaacttttatgcttcttttaaacaagttgttaaaatgctaatctttaaaatagaatttaatcaacnnnnnnnnnnnc 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||           |    
T  1069044 atgtttgcatgttaattttgttagaacttttatgcttcttttaaacaagttgttaaaatgcta--ctttaaaatagaattcaatcaacttttttttt--c 1069139  T
Q  343 aagtttgttgagctcgtaagagaaaa-tgaatgaaattacttatttaatatgaaatacctttttactcttgaaaagagatattaacctcgttgtttgaat 441  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  1069140 aagttcgttgagctcgtaagagaaaaatgaatgaaattacttatttaatatgagatatctttttactctcgaaaagagatattaacctcgttgtttgaat 1069239  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 236 - 429
Target Start/End: Original strand, 32158541 - 32158735
Alignment:
Q  236 tataaatatgtttgcatgttaattttgttagaacttttatgcttcttttaaacaagttgttaaaatgctaatctttaaaatagaatttaatcaac--nnn 333  Q
    |||||||||||||||||||||| ||||||  ||| ||||||| |||||| || ||||| | |||||||||||||||||||||||| || ||||||         
T  32158541 tataaatatgtttgcatgttaagtttgttgcaacatttatgcctctttttaaaaagttatgaaaatgctaatctttaaaatagaaatttatcaactttat 32158640  T
Q  334 nnnnnnnncaagtttgttgagctcgtaagagaaaatgaatgaaattacttatttaatatgaaatacctttttactct-tgaaaagagatattaacct 429  Q
            ||||||  ||||||| | ||||| | ||||||||||||||||||||||||||| |||  |||||||||| ||  |||||||||||||||    
T  32158641 tttattcccaagttccttgagcttggaagaggagatgaatgaaattacttatttaatatgagatatgtttttactctctg--aagagatattaacct 32158735  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 36103422 - 36103348
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 86  Q
    ||||| |||||| ||||||||| |||||||||||||||| | |||||||| || ||||||||| |||||||||||    
T  36103422 ttctctttcataatttcttcttccaagtgtttatcaattattttatttttatccaatcttattttcaattcattc 36103348  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 6830878 - 6830912
Alignment:
Q  18 ttcatagtttcttcttgcaagtgtttatcaattgt 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  6830878 ttcatagtttcttcttgcaagtatttatcaattgt 6830912  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 35500779 - 35500867
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatattaattat 100  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||| ||||| ||||    
T  35500779 ttctctttcacaatttcttcttgcaagtgtttatcaattgtctgatttttatcaaattttattctcaattcattccaagtattagttat 35500867  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 9958272 - 9958203
Alignment:
Q  25 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  9958272 tttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 9958203  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 32177570 - 32177639
Alignment:
Q  25 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  32177570 tttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 32177639  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 12380933 - 12380851
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  12380933 ttctctttcacaatttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 12380851  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 23100271 - 23100345
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 86  Q
    ||||| |||||| ||||||||||||||||| |||||||||| |  ||||  || || ||||||||||||||||||    
T  23100271 ttctctttcataatttcttcttgcaagtgtatatcaattgtttggttttcatccaaccttattctcaattcattc 23100345  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 1418593 - 1418675
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  1418593 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 1418675  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 30378574 - 30378492
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  30378574 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 30378492  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 43811072 - 43811018
Alignment:
Q  32 ttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 86  Q
    |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||    
T  43811072 ttgcaagtgtttataaattgtctaatttttatccaatcttattcacaattcattc 43811018  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 18581349 - 18581431
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  18581349 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 18581431  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 38698462 - 38698380
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  38698462 ttctctttcacaatttcttcttgcaagtgtatatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 38698380  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 13072291 - 13072365
Alignment:
Q  12 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 86  Q
    ||||| |||| | ||||||||||||||||||||||||||| || |||||| || ||||| |||||||||||||||    
T  13072291 ttctctttcacaatttcttcttgcaagtgtttatcaattgcctgatttttatcaaatctcattctcaattcattc 13072365  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 5276457 - 5276383
Alignment:
Q  20 catagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    |||| |||||| ||| ||||||| ||||||||| | |||||| || |||||||||||||| |||||| |||||||    
T  5276457 catactttctttttgtaagtgttcatcaattgtatgatttttatccaatcttattctcaaatcattcaaaatatt 5276383  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 21206157 - 21206088
Alignment:
Q  25 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    |||||||| |||||||| |||||||||| | |||||| |||||||||||| |||||| ||| ||| ||||    
T  21206157 tttcttctagcaagtgtctatcaattgtttgatttttatctaatcttattttcaatttattacaagtatt 21206088  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 11435630 - 11435683
Alignment:
Q  267 aacttttatgcttcttttaaacaagttgttaaaatgctaatctttaaaatagaa 320  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  11435630 aacttttatgcttcttttaaacaaattgataaaatgctaatctttaaaatagaa 11435683  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 41871058 - 41870989
Alignment:
Q  25 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 94  Q
    |||||||||| |||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  41871058 tttcttcttgtaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 41870989  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 22414238 - 22414172
Alignment:
Q  236 tataaatatgtttgcatgttaattttgttagaacttttatgcttcttttaaacaagttgttaaaatg 302  Q
    |||||||||| |||  |||||| | ||||  ||| ||||||||||||||||||||||||||| ||||    
T  22414238 tataaatatgcttgtttgttaagtgtgttgcaacatttatgcttcttttaaacaagttgttataatg 22414172  T

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Target: scaffold0552 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 10380 - 10414
Alignment:
Q  18 ttcatagtttcttcttgcaagtgtttatcaattgt 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  10380 ttcatagtttcttcttgcaagtatttatcaattgt 10414  T

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