View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568_low_11 (Length: 452)
Name: NF4568_low_11
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 42944925 - 42944499
Alignment:
| Q |
17 |
aaatagcactactcttttacaatacggtaatgttgaacatcacgaataatccattttactactgtatcatgaactttgattccaacaacgcttttgaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42944925 |
aaatagcactactcttttacaatacggtaatgttgaacatcacgaataacccagtttacaactgtatcatgaactttgattccaacaacgcttttgaaat |
42944826 |
T |
|
| Q |
117 |
gttaaaaatttgaaccccactgtctgcgtttattccggccattcccaagatttaattggttgagggttatttcgtgaatcattcgggaaaatatctctcg |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42944825 |
gttaaaaatttgaaccccactgtccgcgtttattccggccattcccaagatttaattggttgagggttatttcgtgaatcattcgagaaaatatctctcg |
42944726 |
T |
|
| Q |
217 |
ccgcaaatagcactactctttaccatatctataatgtgtgcattaaaatccattggatgctatctaatgggggtgtaggagaagatgcctaatgagattg |
316 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42944725 |
ccacaaatagcaatactctttaccatatctataatgtgtgcattaaaatccattggatgctatctaatgggggtgtaggaggagatgcctaatgagattg |
42944626 |
T |
|
| Q |
317 |
ggaagaaggtgcaacttgcaaaagagtacgtttgaatgcactcagatataaggcataaacaatttacaattcatactatatatgcatttttatatcaaaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
42944625 |
ggaagaaggtgcaacttgcaaaagagtacgtttgaatgcactcagatataaggcataaacaatttacaattcatattatatatacatttttatatcaaaa |
42944526 |
T |
|
| Q |
417 |
tcgaacaaccacacaattgagtattat |
443 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42944525 |
tcgaacaaccacacaattgagtattat |
42944499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 46384949 - 46384989
Alignment:
| Q |
139 |
tctgcgtttattccggccattcccaagatttaattggttga |
179 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46384949 |
tctgcatttattccggccattcccaagttttaattggttga |
46384989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University