View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_12 (Length: 452)
Name: NF4568_low_12
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 437
Target Start/End: Complemental strand, 14121479 - 14121048
Alignment:
| Q |
6 |
aatttcagcttgattagggtgctggtagcgacccataagggagacagcgacccaaataccgccaggagcaaatatctcataacgatataattgaatctgc |
105 |
Q |
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| T |
14121479 |
aatttcagcttgattagggtgctgatagcgacccataagggagacagcgacccaaataccaccaggagcaaagatctcataacgatacaattgaatctga |
14121380 |
T |
|
| Q |
106 |
cttcctatcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacacgagatacaggcctgtttgggtcaagag |
205 |
Q |
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| T |
14121379 |
cttcctatcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacatgagctacaggcctgttggggtcaagag |
14121280 |
T |
|
| Q |
206 |
gcgccccagcattatggacaaagtcgtaaagatcatagtaagtgttgttgggagtgtttccttgagctggtgcttgaaacccgtttgctaagatctcctg |
305 |
Q |
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| T |
14121279 |
gcgccccagcattatggacaaagtcgtcaagattatagtaagtgttgttgggagtgtttccttgagctggtgcttggaacccgtttgctaagatctcctg |
14121180 |
T |
|
| Q |
306 |
gtaaggcctcgtggtccatcgatacactggacggcggatatcaaactcaaagtcgtcaactctgtacacaagctcatcccccaagatcggtctgttaacg |
405 |
Q |
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| T |
14121179 |
gtaaggcctcgtggtccatcgatacactggacgccggatatcaaattcaaagtcgtccactctgcccgcaacctcatgccccaagatcggtcggttaacg |
14121080 |
T |
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| Q |
406 |
cgctcaagagtgttcacaagacgttgggcttc |
437 |
Q |
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| T |
14121079 |
cggtcaagattgctcgccagacgttgggcttc |
14121048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 14114051 - 14113651
Alignment:
| Q |
7 |
atttcagcttgattagggtgctggtagcgacccataagggagacagcgacccaaataccgccaggagcaaatatctcataacgatataattgaatctgcc |
106 |
Q |
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||||||||| ||||||||| ||||||||||||| |||||| ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||| | |
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| T |
14114051 |
atttcagctagattagggttctggtagcgacccttaagggtgacagcggaccaaataccaccaggagcaaagatctcataacgatacaattgaatctgac |
14113952 |
T |
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| Q |
107 |
ttcctatcgggaggacatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacacgagatacaggcctgtttgggtcaagagg |
206 |
Q |
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| T |
14113951 |
ttcctatcgggaggacatcagttgaaggatttggacgccatgcattattaatagtggtgctaataaaggcacgaggtacagctctgttggggtcaacagg |
14113852 |
T |
|
| Q |
207 |
cgccccagcattatggacaaagtcgtaaagatcatagtaagtgttgttgggagtgtttccttgagctggtgcttgaaacccgtttgctaagatctcctgg |
306 |
Q |
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| T |
14113851 |
caccccaacactatggacaaagccgtcaagatcatggtaaatgttgttgtcagcgtttccttgatctggtgcttggaacccgtttgtgaagatctcctgg |
14113752 |
T |
|
| Q |
307 |
taaggcctcgtggtccatcgatacactggacggcggatatcaaactcaaagtcgtcaactctgtacacaagctcatcccccaagatcggtctgttaacgc |
406 |
Q |
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|||||| || || |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |||||| |||||||||||| |
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| T |
14113751 |
taaggcttcctgctccatcgatacattggacggcggatatcaaactcaaagtcgtccactctgtccacaacctcatgccctaagatctgtctgttaacgc |
14113652 |
T |
|
| Q |
407 |
g |
407 |
Q |
| |
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| |
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|
| T |
14113651 |
g |
14113651 |
T |
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