View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_14 (Length: 437)
Name: NF4568_low_14
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 48020578 - 48020997
Alignment:
| Q |
1 |
gaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggcaggaacgttgtgactataaggagatgttttttgcaaatgaga |
100 |
Q |
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| T |
48020578 |
gaaggtgagtgtactattttctagagagagaaagagtggaaatgatgaggaagttggcaggaacgttgtgactataaggagatgttttttgcaaatgaga |
48020677 |
T |
|
| Q |
101 |
aatgtgtcattatggtttgtttggttggtactcctaattccaatactcccactacttctttgnnnnnnnctattgtcctgaatccttaatccttaataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || | || |||||||||||||||||| |
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| T |
48020678 |
aatgtgtcattatggtttgtttggttggtactcctaattccaatactaccactacttctttgttttgtctttttctattg--tccttaatccttaataat |
48020775 |
T |
|
| Q |
201 |
cctatgttgttttg-----------------ttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgccaatataatcatg |
283 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020776 |
cctatgttgttttgtttgttggattaatttgttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgccaatataatcatg |
48020875 |
T |
|
| Q |
284 |
tccattgttcacaatctttgcatgttgtctcattttcaattatc-ttttgagtattggttgtagtttcttttcgagcaaggcattttgtttcatataata |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
48020876 |
tccattgttcacaatctttgcatgttgtctcattttcaattatctttttgagtattggttgtagtttcttttcgagcaaggcattttgtttcctatgata |
48020975 |
T |
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| Q |
383 |
aagctgcgccatgatctcaatt |
404 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
48020976 |
aagctgcgccataatctcaatt |
48020997 |
T |
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