View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_15 (Length: 431)
Name: NF4568_low_15
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 39 - 415
Target Start/End: Complemental strand, 15375588 - 15375214
Alignment:
| Q |
39 |
aaacgaaaggcgccgtgaatataaataagaaggaaattgtgacggaaggtgcagtaataaagtcaggtacctcatttcatttcccattgtaaaatgttat |
138 |
Q |
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| T |
15375588 |
aaacgaaagacgccgtgaatataaaagagaaggaaattgtgacggaaggtgcactaataaagtcaggtacctcatttcatttcccattgtaaaatgttat |
15375489 |
T |
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| Q |
139 |
tgatattgttgagcgaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaaccggttcaaccattaagtgcaacagag |
238 |
Q |
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| T |
15375488 |
tgatattgttgagcgaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaaccggttcaaccattaagtgcagcagag |
15375389 |
T |
|
| Q |
239 |
gctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcaacccccatatgcccagttttgcagaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
15375388 |
gctgtgacatctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcagcccccatatgcccagttttgtagaa |
15375289 |
T |
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| Q |
339 |
ggacatcaatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgccttaacttact |
415 |
Q |
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| T |
15375288 |
ggacatcaatttgatacgaca-aattttgcctccagagacggaggagcctttagaac-atttacgccttaacttact |
15375214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 53 - 408
Target Start/End: Complemental strand, 28299674 - 28299321
Alignment:
| Q |
53 |
gtgaatataaataagaaggaaattgtgacggaaggtgcagtaataaagtcaggtacctcatttcatttcccattgtaaaatgttattgatattgttgagc |
152 |
Q |
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| T |
28299674 |
gtgaatatagatgagaatgaaattgtgaaggaaggtgcactaacgaagtcaggtacctcatttcatttcccattggagaatgtcattgatattgttgaac |
28299575 |
T |
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| Q |
153 |
gaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaac-------cggttcaaccattaagtgcaacagaggctgtga |
245 |
Q |
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| T |
28299574 |
gaaa---------caccgaggaaaaggttcaacagttagagaactgtcctatacttgaaagttgaatcggttcagcctctaagtgcaacaacggctgcga |
28299484 |
T |
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| Q |
246 |
catctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcaacc-cccatatgcccagttttgcagaaggacat |
344 |
Q |
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| T |
28299483 |
catttcctgggagttccacaaccacatcctcacatgaaactgttccagatactcaaaacatgcagcaaccgcccatatacccagttttgcagaaggatat |
28299384 |
T |
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| Q |
345 |
caatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgcctta |
408 |
Q |
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| T |
28299383 |
caatttgttacggca-atttttggatccagaggtggaggagcctacaaaacaatttacacctta |
28299321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 53 - 408
Target Start/End: Original strand, 28512399 - 28512752
Alignment:
| Q |
53 |
gtgaatataaataagaaggaaattgtgacggaaggtgcagtaataaagtcaggtacctcatttcatttcccattgtaaaatgttattgatattgttgagc |
152 |
Q |
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||||||||| || |||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||| | |
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| T |
28512399 |
gtgaatatagatgagaatgaaattgtgaaggaaggtgcactaacgaagtcaggtacctcatttcatttcccattggagaatgtcattgatattgttgaac |
28512498 |
T |
|
| Q |
153 |
gaaatgatgttgacactgagggactgattcagcagttatagaattctcctatacttgaac-------cggttcaaccattaagtgcaacagaggctgtga |
245 |
Q |
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| T |
28512499 |
gaaa---------caccgaggaaaaggttcaacagttagagaactgtcctatacttgaaagttgaatcggttcagcctctaagtgcaacaacggctgcga |
28512589 |
T |
|
| Q |
246 |
catctcatgggatgtctacaaccatatcctcacaggaaaccgctctggatactcataacatgcagcaacc-cccatatgcccagttttgcagaaggacat |
344 |
Q |
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||| || ||||| || ||||||| ||||||||| ||||| | || |||||||| |||||||||||||| ||||||| |||||||||||||||||| || |
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| T |
28512590 |
catttcctgggagttccacaaccacatcctcacatgaaactgttccagatactcaaaacatgcagcaaccgcccatatacccagttttgcagaaggatat |
28512689 |
T |
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| Q |
345 |
caatttgatacgacagatttttgcctccagagacggaggagcctacagaacaatttacgcctta |
408 |
Q |
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||||||| |||| || ||||||| ||||||| ||||||||||||| |||||||||| ||||| |
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| T |
28512690 |
caatttgttacggca-atttttggatccagaggtggaggagcctacaaaacaatttacacctta |
28512752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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