View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_17 (Length: 415)
Name: NF4568_low_17
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 171809 - 172190
Alignment:
| Q |
17 |
atgaatttgaaagaggaagctgctctttctggccctgatcgtgttttcacatcaagaaaaattgaattgagaaaacaaaattcttattggcacggtagta |
116 |
Q |
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| T |
171809 |
atgaatttgaaagaggaagctgctcttcctggccctgatcgtgttttcacatcaagaaaaattgaattgagaaaacaaaattcttattggcacggtagta |
171908 |
T |
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| Q |
117 |
ctgcacaattgtcaagattttctaattcagttgcaattcgaggtgattcacgaattgatatgagtggagactgtagtttgaactcacagtggttagagga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171909 |
ctgcacaattgtcaagattttctaattcagttgcaattcgaggtgattcacaacttgatatgagtggagactgtagtttgaactcacagtggttagagga |
172008 |
T |
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| Q |
217 |
tcagtttgatacgagatatagtcatttggatgatggtgagtccaatcaattactggatggaaccaaacattcacgcaagaaagacttccatctgttcaga |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172009 |
tcagtttgatatgagatatagtcatttggatgatggtgagtccaatcaattactggatggaaccaaacattcacgcaagaaagacttccatctgttcaga |
172108 |
T |
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| Q |
317 |
aaggatcgtgccatggtaaagaaattacttacaaacactaatttgtgcaattgttctattattttggagtcagaactacatg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172109 |
aaggatcgtgccatggtaaagaaattacttacaaacactaatttgtgcaattgttctattattttggagtcagaactacatg |
172190 |
T |
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