View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_20 (Length: 391)
Name: NF4568_low_20
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 15443298 - 15442933
Alignment:
| Q |
18 |
aatatatatttcataaacaaattgaaatcaatgaataaaggaaattacacaagtacatgctgtaattaataaaacttctgttaaacacactttctttgac |
117 |
Q |
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| T |
15443298 |
aatatatatttcataaacaaattgaaatcaatgaataaaggaaattacataagtacatgctgtaattaataaaactcctattaaaaacactttctttgac |
15443199 |
T |
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| Q |
118 |
gatactaataaactaaaaatattatgggataattgcaattttaatcctccaaagagttgtgattgtgcaattttaactccctacttatagcagccaaaat |
217 |
Q |
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| T |
15443198 |
gatactaataaactaaaaatattatgggataattgcaattttaatcctccaaagagttgtgattgtgaaattttaactccctacttataacagccaaaat |
15443099 |
T |
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| Q |
218 |
tgctaaagatgaagggggttataatcgcacaatcacaaacactggaagaccaaaagtacaattaaatcaaatattttctaatttctaattccgaagatct |
317 |
Q |
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| T |
15443098 |
tgctaaagatgaagggggttataatcgcacaatcacaaacactggaagaccaaaagtgcaattaaatcaaatattttctaatttctaattccgaagatct |
15442999 |
T |
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| Q |
318 |
tgtccatggttggatatttagttccagatgatttagaggtagttgttgtataggatgatgatgatg |
383 |
Q |
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| T |
15442998 |
tgtccatggttgggtatttagttccagttgatttagaggtagttgttgcagaggatgatgatgatg |
15442933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 15462559 - 15462227
Alignment:
| Q |
18 |
aatatatatttcataaacaaattgaaatcaatgaataaaggaaattacacaagtacatgctgtaattaataaaa-cttctgttaaacacactttcttt-- |
114 |
Q |
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| T |
15462559 |
aatatatatttcataaataaattgaaatcaatgaataatggaagttacatagatacatgctgtaattagtaaaaacttggactacacagactttctttat |
15462460 |
T |
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| Q |
115 |
--gacgatactaataaac-------taaaaatattatgggataattgcaattttaatcctccaaagagttgtgattgtgcaattttaactccctacttat |
205 |
Q |
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| T |
15462459 |
ttgacgatactattaaacaaacttgtaaagatatcatgtgatagttgcaattttaatcctccaaagtattgtgattgtggaactttaactccccacttat |
15462360 |
T |
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| Q |
206 |
a------gcagccaaaattgctaaagatgaaggggg-ttataatcgcacaatcacaaacactggaagaccaaaagtacaattaaatcaaatattttctaa |
298 |
Q |
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| T |
15462359 |
atatatagatgccaaaatctctaaatattacggggggttaaaatcgcacaatcacgatcattgaaagatcaaaagtgcaattaaatctgatattttctaa |
15462260 |
T |
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| Q |
299 |
tttctaattccgaagatcttgtccatggttgga |
331 |
Q |
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| T |
15462259 |
tttctaattccaaagatcttgtccatggttgga |
15462227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 15452639 - 15452442
Alignment:
| Q |
18 |
aatatatatttcataaacaaattgaaatcaatgaataaaggaaattacacaagtacatgctgtaattaat-aaaacttctgttaaacacactttctttga |
116 |
Q |
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||||||||||||| ||||||||| |||||||||||||| |||| ||||| | || |||||||||||||| ||||| | |||||| |||||| |||| |
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| T |
15452639 |
aatatatatttcagaaacaaattaaaatcaatgaataatggaagttacatagatatatgctgtaattaataaaaacatagactaaacagactttccttga |
15452540 |
T |
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| Q |
117 |
cgatactaataaac-------taaaaatattatgggataattgcaattttaatcctccaaag-agttgtgattgtgcaattttaactccctacttata |
206 |
Q |
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| T |
15452539 |
cgatactattgaacaaacttgtaaaaatattatgtgatagttgcaattttaatcctccaaagtatgtgtgattgtggaactttaactccccacttata |
15452442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 15436646 - 15436565
Alignment:
| Q |
286 |
aaatattttctaatttctaattccgaagatcttgtccatggttggatatttagttccagatgatttagaggtagttgttgta |
367 |
Q |
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| T |
15436646 |
aaatattttctagtttctaattccaaagatctgccccatggttggatgtttagtcccagttgatttagaggtagttgttgta |
15436565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 15452385 - 15452310
Alignment:
| Q |
260 |
tggaagaccaaaagtacaattaaatcaaatattttctaatttctaattccgaagatcttgtccatggttggatatttagttcc |
342 |
Q |
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| T |
15452385 |
tggaagaacaaaagtgcaattaaatctgatattttctaatt-------ccgaagatcttgtccatggttggaggtttagttcc |
15452310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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