View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_low_23 (Length: 369)

Name: NF4568_low_23
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_low_23
NF4568_low_23
[»] chr3 (12 HSPs)
chr3 (23-329)||(18030842-18031148)
chr3 (195-353)||(27400580-27400738)
chr3 (184-299)||(27370779-27370894)
chr3 (51-301)||(27344177-27344427)
chr3 (235-353)||(19467873-19467991)
chr3 (193-299)||(26183156-26183262)
chr3 (208-301)||(18722984-18723077)
chr3 (193-299)||(26238997-26239103)
chr3 (180-299)||(26211790-26211909)
chr3 (201-353)||(18080638-18080790)
chr3 (69-206)||(27400940-27401077)
chr3 (324-353)||(27344435-27344464)
[»] scaffold0854 (1 HSPs)
scaffold0854 (51-353)||(3831-4133)
[»] scaffold0043 (3 HSPs)
scaffold0043 (202-301)||(72826-72925)
scaffold0043 (324-353)||(72789-72818)
scaffold0043 (51-91)||(73036-73076)
[»] scaffold1344 (2 HSPs)
scaffold1344 (51-301)||(864-1114)
scaffold1344 (319-353)||(1117-1151)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 18031148 - 18030842
Alignment:
Q  23 tgacaagattgaggaaatagacgatggcgataatgataaaaagaatagttgcaactcaatgttttcaaagctgcaagttctcaaaatctttgaatgtccc 122  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18031148 tgacaagattgaggaaatagacaatggtgataatgataaaatgaatagttgcaactcaatgttttcaaagctgaaagttctcaaaatctttgaatgtccc 18031049  T
Q  123 ctattacgatcaatatttccatttctctctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||     
T  18031048 ctattacgatcaatatttccatttctctctgctcaagaccttttgttaccagagtcaatcatgatagaaagttgtgataagctggaatacatatttggta 18030949  T
Q  223 aacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatatttccagaatcttatgatatcatgccttt 322  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18030948 aacaccaagatgtccaacttgcttcactaaatgaattggagcttaatgatttgccaaacttcatcgacatatttccagaatcttatgatatcatgccttt 18030849  T
Q  323 gtccatt 329  Q
    |||||||    
T  18030848 gtccatt 18030842  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 195 - 353
Target Start/End: Complemental strand, 27400738 - 27400580
Alignment:
Q  195 tgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatat 294  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||| |||| || ||||| | |||  ||| ||||||||||||||| ||||||    
T  27400738 tgtgataagctgaaacacatatttggtcaacaccaagatgtccaactcgctttactagaaaaattgtaccttgttgatttgccaaacttcatcaacatat 27400639  T
Q  295 ttccagaatcttatgatatcatgcctttgtccattaaagggtcatctaattccatttcc 353  Q
    ||||||||||| || ||  ||||||||  ||||||||| ||||||||||||| ||||||    
T  27400638 ttccagaatctgatcattccatgccttcatccattaaaaggtcatctaattctatttcc 27400580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 27370779 - 27370894
Alignment:
Q  184 ggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaactt 283  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| || |  ||||||  ||    
T  27370779 ggatacaaaattgtgatgagctggaatacatatttggccaacaccaagatgttcaactcgcttcactaaaagaattgaagcttgatcatgtgccaatttt 27370878  T
Q  284 catcgacatatttcca 299  Q
    ||||||||||||||||    
T  27370879 catcgacatatttcca 27370894  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 27344177 - 27344427
Alignment:
Q  51 gataatgataaaaagaatagttgcaactcaatgttttcaaagctgcaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctct 150  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||| || ||||    ||     |||||| || ||||| ||  ||| |||||| || ||    
T  27344177 gataatgataataacaatagttgcaactcaatgtttccaaatctgaaatttctttgtattgaaaaatgtcaccaattacaatttatacttccatgtcact 27344276  T
Q  151 ctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcact 250  Q
    |||||  |||| ||||||||| | | || |||| ||||  |||||||||  ||||| | ||||||||||| ||||||||||||||  |||| ||||||||    
T  27344277 ctgctggagactttttgttactagaatctatcatgataagaagttgtgacgagctgaagtacatatttggccaacaccaagatgttaaactcgcttcact 27344376  T
Q  251 aaaagaattggagcttaatgacttgccaaacttcatcgacatatttccaga 301  Q
    ||||||||||||||||  ||   ||||||| |||||| |||||||||||||    
T  27344377 aaaagaattggagcttcttgttgtgccaaatttcatcaacatatttccaga 27344427  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 19467873 - 19467991
Alignment:
Q  235 tccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatatttccagaatcttatgatatcatgcctttgtccattaaagg 334  Q
    ||||||||||||||||| || ||||||||||||  || |||| ||| |||||||||||||||||||||||| || ||  ||||||||  ||||||||| |    
T  19467873 tccaacttgcttcactagaaaaattggagcttagagatttgcaaaatttcatcgacatatttccagaatctaatcattccatgccttcatccattaaaag 19467972  T
Q  335 gtcatctaattccatttcc 353  Q
     ||| ||||||| ||||||    
T  19467973 ctcacctaattctatttcc 19467991  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 26183262 - 26183156
Alignment:
Q  193 gttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacat 292  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||| | |||||||||  | ||||  || |||| |||||||| ||||||||| |    
T  26183262 gttgtgacaagctggaatacatatttggccaacaccaagatgtcaaacttacatcactaaaaacagtggacattcatgatttgccaaatttcatcgactt 26183163  T
Q  293 atttcca 299  Q
    |||||||    
T  26183162 atttcca 26183156  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 18723077 - 18722984
Alignment:
Q  208 aatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatatttccaga 301  Q
    ||||||||||||| |||||||||||||| |||||  ||||||||||||||||| ||||| ||||  ||||||| |||||  |||||||||||||    
T  18723077 aatacatatttggccaacaccaagatgttcaactcccttcactaaaagaattgaagcttgatgatgtgccaaatttcatttacatatttccaga 18722984  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 26239103 - 26238997
Alignment:
Q  193 gttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacat 292  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||  ||| | || | || |||||||| |||||||||||    
T  26239103 gttgtgacaagctgaaatacatatttggccaacaccaagatgtcaaactcacatcactaaaagaggtggcgattgaagatttgccaaatttcatcgacat 26239004  T
Q  293 atttcca 299  Q
    |||||||    
T  26239003 atttcca 26238997  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 26211909 - 26211790
Alignment:
Q  180 atcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaa 279  Q
    ||||| ||| || ||||||| |||||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||  ||| | ||   || |||||||    
T  26211909 atcagaataaaatgttgtgacaagctgaaatacatatttggccaacaccaagatgtcaaactcacatcactaaaagaggtggcgattgtagatttgccaa 26211810  T
Q  280 acttcatcgacatatttcca 299  Q
    | ||||||||||||| ||||    
T  26211809 atttcatcgacatatgtcca 26211790  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 18080790 - 18080638
Alignment:
Q  201 aagctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatatttccag 300  Q
    |||||| ||| ||||||||| |||||||||||| || || ||||||||||||||||| ||  | ||  ||| |  || || ||||| || || |||||||    
T  18080790 aagctgaaatgcatatttggccaacaccaagatttcaaatttgcttcactaaaagaaatgatgattggtgattctccgaatttcattgatatttttccag 18080691  T
Q  301 aatcttatgatatcatgcctttgtccattaaagggtcatctaattccatttcc 353  Q
    |||||||| ||  ||  | ||  |||||| |||||||||||||||||||||||    
T  18080690 aatcttatcattccacactttcatccattgaagggtcatctaattccatttcc 18080638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 27401077 - 27400940
Alignment:
Q  69 agttgcaactcaatgttttcaaagctgcaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctctctgctcaagaccttttgt 168  Q
    |||||||||||||||||| |||| ||| |||||||||  || | | |||| || | ||||| ||  ||| |||||| || |||||||  | |||||||||    
T  27401077 agttgcaactcaatgtttccaaacctgaaagttctcagtatttatcaatgccctcaattacaatttatacttccatatcactctgctggaaaccttttgt 27400978  T
Q  169 taccaaagtcaatcaggatacaaagttgtgataagctg 206  Q
     || | | || |||| ||||||||||||||||||||||    
T  27400977 cactagaatctatcatgatacaaagttgtgataagctg 27400940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Original strand, 27344435 - 27344464
Alignment:
Q  324 tccattaaagggtcatctaattccatttcc 353  Q
    ||||||||||||||||||||||||||||||    
T  27344435 tccattaaagggtcatctaattccatttcc 27344464  T

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Target: scaffold0854 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 353
Target Start/End: Complemental strand, 4133 - 3831
Alignment:
Q  51 gataatgataaaaagaatagttgcaactcaatgttttcaaagctgcaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctct 150  Q
    |||||||||||||| || |||||||||||||||||| |||| ||| || |||||   ||    ||||||  || ||||| ||  | | ||||||||| ||    
T  4133 gataatgataaaaacaaaagttgcaactcaatgtttccaaatctgaaatttctctgtattgaagaatgtgaccaattacaatttacacttccatttcact 4034  T
Q  151 ctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcact 250  Q
    |||||  |||| ||||||||| | | || |||| |||||||   |||  | ||||| ||||||||||||| ||||||||||||||  |||| ||||||||    
T  4033 ctgctggagactttttgttactagaatctatcaagatacaattatgttttgagctgaaatacatatttggccaacaccaagatgttaaactcgcttcact 3934  T
Q  251 aaaagaattggagcttaatgacttgccaaacttcatcgacatatttccagaatcttatgatatcatgcctttgtccattaaagggtcatctaattccatt 350  Q
    |||||||||| |||||| |    |||| || ||||||||||||||||||||||| | | ||  ||||||||   |||||||||||||||||||||| |||    
T  3933 aaaagaattgcagcttagttgtgtgccgaatttcatcgacatatttccagaatcgtctcattccatgccttcacccattaaagggtcatctaattcaatt 3834  T
Q  351 tcc 353  Q
    |||    
T  3833 tcc 3831  T

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Target: scaffold0043 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 72925 - 72826
Alignment:
Q  202 agctggaatacatatttggtcaacaccaagatgtccaacttgcttcactaaaagaattggagcttaatgacttgccaaacttcatcgacatatttccaga 301  Q
    ||||| ||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||| ||||  ||||||| ||||||||||||||||||||    
T  72925 agctgaaatacatatttggccaacaccaagatgcccaactcgcttcactaaaacaattggagcttgatgatgtgccaaatttcatcgacatatttccaga 72826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 72818 - 72789
Alignment:
Q  324 tccattaaagggtcatctaattccatttcc 353  Q
    ||||||||||||||||||||||||||||||    
T  72818 tccattaaagggtcatctaattccatttcc 72789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 73076 - 73036
Alignment:
Q  51 gataatgataaaaagaatagttgcaactcaatgttttcaaa 91  Q
    ||||||||||| || ||||||||||||||||||||| ||||    
T  73076 gataatgataataacaatagttgcaactcaatgtttccaaa 73036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 864 - 1114
Alignment:
Q  51 gataatgataaaaagaatagttgcaactcaatgttttcaaagctgcaagttctcaaaatctttgaatgtcccctattacgatcaatatttccatttctct 150  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||| || |||||   ||     |||||| |  ||||| ||  ||| |||||| || ||    
T  864 gataatgataataaaaatagttgcaactcaatgtttccaaatctgaaatttctctgtattgaaaaatgtcacaaattacaatttatacttccatgtcact 963  T
Q  151 ctgctcaagaccttttgttaccaaagtcaatcaggatacaaagttgtgataagctggaatacatatttggtcaacaccaagatgtccaacttgcttcact 250  Q
    |||||  |||| ||||||||| | | |  |||| |||| ||| |||| |||||||||| ||||||||||| ||||||||||||||| |||| | ||||||    
T  964 ctgctggagactttttgttactagaatatatcaagatagaaaattgtcataagctggagtacatatttggccaacaccaagatgtcaaactcgtttcact 1063  T
Q  251 aaaagaattggagcttaatgacttgccaaacttcatcgacatatttccaga 301  Q
    ||||  |||| ||| ||||||  ||||||| ||||||||||||||||||||    
T  1064 aaaaatattgaagcataatgatgtgccaaatttcatcgacatatttccaga 1114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 1117 - 1151
Alignment:
Q  319 ctttgtccattaaagggtcatctaattccatttcc 353  Q
    |||||||||||||||||||||||||||||||||||    
T  1117 ctttgtccattaaagggtcatctaattccatttcc 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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