View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_27 (Length: 348)
Name: NF4568_low_27
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 338
Target Start/End: Original strand, 4134533 - 4134868
Alignment:
| Q |
3 |
ttcatcgatggaaaagcttcatccgcaaggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaa |
102 |
Q |
| |
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||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| ||| |
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| T |
4134533 |
ttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaa |
4134632 |
T |
|
| Q |
103 |
gttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgt |
202 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134633 |
gtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgt |
4134732 |
T |
|
| Q |
203 |
gacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
4134733 |
gacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaa |
4134832 |
T |
|
| Q |
303 |
tttaatgggctgaaaaatcctagcttgaggtctgtg |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4134833 |
tttaatgggctgaaaaatcctagcttgaggtctgtg |
4134868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 338
Target Start/End: Original strand, 4145335 - 4145670
Alignment:
| Q |
3 |
ttcatcgatggaaaagcttcatccgcaaggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaa |
102 |
Q |
| |
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||||||||||||| |||| ||| | | |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| ||| |
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| T |
4145335 |
ttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaa |
4145434 |
T |
|
| Q |
103 |
gttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgt |
202 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
4145435 |
gtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgt |
4145534 |
T |
|
| Q |
203 |
gacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
4145535 |
gacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaa |
4145634 |
T |
|
| Q |
303 |
tttaatgggctgaaaaatcctagcttgaggtctgtg |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4145635 |
tttaatgggctgaaaaatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 4123996 - 4124315
Alignment:
| Q |
11 |
tggaaaagcttcatccgcaaggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
110 |
Q |
| |
|
||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123996 |
tggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
4124095 |
T |
|
| Q |
111 |
gttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattc |
210 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
4124096 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattc |
4124195 |
T |
|
| Q |
211 |
catttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4124196 |
catttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgg |
4124295 |
T |
|
| Q |
311 |
gctgaaaaatcctagcttga |
330 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
4124296 |
gctgaaaaatcctagcttga |
4124315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 4153346 - 4153665
Alignment:
| Q |
11 |
tggaaaagcttcatccgcaaggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
110 |
Q |
| |
|
||||| |||| |||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153346 |
tggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
4153445 |
T |
|
| Q |
111 |
gttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattc |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4153446 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattc |
4153545 |
T |
|
| Q |
211 |
catttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgg |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4153546 |
catttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgg |
4153645 |
T |
|
| Q |
311 |
gctgaaaaatcctagcttga |
330 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4153646 |
gctgaaaaatcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 330
Target Start/End: Original strand, 4163692 - 4164024
Alignment:
| Q |
4 |
tcatcgatggaaaagcttcatccgcaaggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaag |
103 |
Q |
| |
|
|||||| ||||| ||| |||||||| |||| |||||||||||||| ||||||| || ||||||||| || || | ||||||||||||| |||| |||| |
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| T |
4163692 |
tcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaag |
4163791 |
T |
|
| Q |
104 |
ttgagctgttgaatttgttgaagttg------aaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtga |
197 |
Q |
| |
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||||||||| |||||| ||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
4163792 |
ttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
4163891 |
T |
|
| Q |
198 |
attgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttgg |
297 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
4163892 |
attgtgactattccatttgaatccttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttgg |
4163991 |
T |
|
| Q |
298 |
ttgaatttaatgggctgaaaaatcctagcttga |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
4163992 |
ttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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