View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_31 (Length: 324)
Name: NF4568_low_31
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 20404837 - 20404534
Alignment:
| Q |
9 |
attattctactgacttgttattaataattgaattgaattagcttattaattgaaccaaacttaattaataaaagtaacatatttaagtatgtatatataa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20404837 |
attattctactgacttgttattaataattgaattgaattagcttattaattgaaccaagcttaattaataaaagtaacatatttaagtatgtatatataa |
20404738 |
T |
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| Q |
109 |
cccaaagaacaagatactcaaaattcaaaaatggtg-aagattata-tgagagatcttcaaataaaacctccttccaaggaatcattcttaaagacatgt |
206 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20404737 |
cccaaagaacaagatactcaaaattcaaaaatgctgaaagattatattgagagatcttcaaataaaacctccttacaaggaatcattcttaaagacatgt |
20404638 |
T |
|
| Q |
207 |
ccttaacaccaatatatacgtcataagtcataactcatgatgatccattccttcaagagnnnnnnnnnctcatgacctgtccaaaacagctattaggcta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
20404637 |
ccttaacaccaatatatacgtcataagtcataactcatgatgatccattccttcaagagaaaaaaaaactcatgacctgtccaaaacacctattaggcta |
20404538 |
T |
|
| Q |
307 |
ttac |
310 |
Q |
| |
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|||| |
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|
| T |
20404537 |
ttac |
20404534 |
T |
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