View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_35 (Length: 299)
Name: NF4568_low_35
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 286
Target Start/End: Complemental strand, 40786313 - 40786067
Alignment:
| Q |
39 |
aaacttagagtgaaacaaattaacgtgatgagtttcaccatatgtaacatgaactttatatgatgataatgagagttgaatataacataacctccaattc |
138 |
Q |
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| T |
40786313 |
aaacttagagtgaaacaaattaacgtgatgagtttcaccatatgtaacatgaactttatatgatgataatgagagttgaatataacataacctccaattc |
40786214 |
T |
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| Q |
139 |
caaatcaaaatatgtacaatggatcctctcacaacaactagtgttcctaatttaacaacatagaaaaatatttattcttgatnnnnnnnnnnnnnntact |
238 |
Q |
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| T |
40786213 |
caaatcaaaatatgtacaatggatcctctcacaacaactagtgttcctaatttaacaacatagaaaaatatttattcttgataaaaaaataaaaaatact |
40786114 |
T |
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| Q |
239 |
taaagtcctaaataggtttactaagaatcccagcactcctctctctgc |
286 |
Q |
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| T |
40786113 |
t-aagtcctaaataggtttactaagaatcccagcattcctctctctgc |
40786067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 40793943 - 40793882
Alignment:
| Q |
151 |
tgtacaatggatcctctcacaacaactagtgttcctaatttaacaacatagaaaaatatttattctt |
217 |
Q |
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| T |
40793943 |
tgtacaatggatcctc-----acaactagtgttccaaatttaacaacatggaaaattatttattctt |
40793882 |
T |
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