View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_low_36 (Length: 285)

Name: NF4568_low_36

Description: NF4568

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4568_low_36

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 171; E-Value: 7e-92

Query Start/End: Original strand, 18 - 188

Target Start/End: Original strand, 10727454 - 10727624

Alignment:

Q	18	gttgggcatttaacgtcagcatgtgggaagtagagagagtgagacatatctgatctgatcagtagtcccactatgtacagaaattgatggcctataattg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10727454	gttgggcatttaacgtcagcatgtgggaagtagagagagtgagacatatctgatctgatcagtagtcccactatgtacagaaattgatggcctataattg	10727553	T

Q	118	tagcttttccttagcttaagaaccacgttcgctccaaaacaatgtcacacccaattctgcgacattacatg	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10727554	tagcttttccttagcttaagaaccacgttcgctccaaaacaatgtcacacccaattctgcgacattacatg	10727624	T

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Target: chr2; HSP #2

Raw Score: 44; E-Value: 4e-16

Query Start/End: Original strand, 230 - 273

Target Start/End: Original strand, 10727660 - 10727703

Alignment:

Q	230	aacagacaacaaacgatattgcaaaaaagtactcattcattcat	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10727660	aacagacaacaaacgatattgcaaaaaagtactcattcattcat	10727703	T

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