View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_39 (Length: 271)
Name: NF4568_low_39
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15449540 - 15449306
Alignment:
| Q |
1 |
caggaacatttcattgaatcagaacattgagcagcacatttacgcccaacagaggaatctttggaaagccattcaggataaatgttacgagtaatgtatt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
15449540 |
caggaacatttcattgaatcagaacattgagtagcacattaacgcccaacagaggaatctttgaaaagccattcaggacaaatgttatgagtaatgtatt |
15449441 |
T |
|
| Q |
101 |
gnnnnnnntggaagcttgccagaatctattcgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaaaaatttctgatcag |
200 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
15449440 |
gaaaaaa-tggaagctttccagaatctattcgattaaccacacatataggaacagcttcttt-ccattggaaatatctttaaaaaaaaatttctgatcag |
15449343 |
T |
|
| Q |
201 |
gcaatctaaccaaacaaaatttaaaatctaatttccc |
237 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
15449342 |
gcaatcttaccaaacaaaatttaaaatctaatttccc |
15449306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 15430019 - 15429787
Alignment:
| Q |
1 |
caggaacatttcattgaatcagaacattgagcagcacatttacgcccaacagaggaatctttggaaagccattcaggataaatgttacgagtaatgtatt |
100 |
Q |
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|||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
15430019 |
caggaacatttcattgaatcagaacaatgatcaacacatgtacgcccaacagaggaatcattgaaaagccattcaggataaatgttacgagtaatgtatt |
15429920 |
T |
|
| Q |
101 |
gnnnnnnntggaagcttgccagaatctattcgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaaaaatttctgatcag |
200 |
Q |
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| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
15429919 |
gaaaata-tggaaccttgccagaatctatatgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaagattttctgatcag |
15429821 |
T |
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| Q |
201 |
gcaatctaaccaaacaaaatttaaaatctaattt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15429820 |
gcaatctaaccaaacaaaatttaaaatctaattt |
15429787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 15488414 - 15488182
Alignment:
| Q |
1 |
caggaacatttcattgaatcagaacattgagcagcacatttacgcccaacagaggaatctttggaaagccattcaggataaatgttacgagtaatgtatt |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
15488414 |
caggaacatttcattgaatcagaacaatgatcaacacatgtacgcccaacagaggaatcattgaaaagccattcaggataaatgttacgagtaatgtatt |
15488315 |
T |
|
| Q |
101 |
gnnnnnnntggaagcttgccagaatctattcgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaaaaatttctgatcag |
200 |
Q |
| |
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| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
15488314 |
gaaaata-tggaaccttgccagaatctatatgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaagattttctgatcag |
15488216 |
T |
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| Q |
201 |
gcaatctaaccaaacaaaatttaaaatctaattt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15488215 |
gcaatctaaccaaacaaaatttaaaatctaattt |
15488182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15540722 - 15540487
Alignment:
| Q |
1 |
caggaacatttcattgaatcagaacattgagcagcacatttacgcccaacagaggaatctttggaaagccattcaggataaatgttacgagtaatgtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||| |
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| T |
15540722 |
caggaacatttcattgaatcagaactatgatcaacacatttacgcccaacagaggaatcattgaaaagccattaaggataattgttacgagtaatgtatt |
15540623 |
T |
|
| Q |
101 |
gnnnnnnntggaagcttgccagaatctattcgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaaaaatttctgatcag |
200 |
Q |
| |
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| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
15540622 |
gaaaata-tggaaccttgccagaatctatatgattaaccacacatataggaacagcttcttttccattggaaatatctctagcaaaaaatttctgatcag |
15540524 |
T |
|
| Q |
201 |
gcaatctaaccaaacaaaatttaaaatctaatttccc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
15540523 |
gcaatctaaccaaacaaaatttaaaatctaatttccc |
15540487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16943111 - 16942876
Alignment:
| Q |
1 |
caggaacatttcattgaatcagaacattgagcagcacatttacgcccaacagaggaatctttggaaagccattcaggataaatgttacgagtaatgtatt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||| |
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| T |
16943111 |
caggaacatttcaatgaatcagaacattgatcagcacatttatgcccaacagaggaatcattgaaaacacattcagggtaaatgttacgagtaatgtatt |
16943012 |
T |
|
| Q |
101 |
gnnnnnnntggaagcttgccagaatctattcgattaaccacacatataggaacagcttcttttccattggaaatatctttaacaaaaaatttctgatcag |
200 |
Q |
| |
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| ||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
16943011 |
gaaaata-tggaaccttgccggaatctatatgattaaccacacatataggaatagcttcttttccattggaaatatctttaacaaaagatttctgatccg |
16942913 |
T |
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| Q |
201 |
gcaatctaaccaaacaaaatttaaaatctaatttccc |
237 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
16942912 |
gcaatctaagcaaacaaaatttaaaatctaatttccc |
16942876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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