View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_4 (Length: 504)
Name: NF4568_low_4
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 45242105 - 45242503
Alignment:
| Q |
1 |
gataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctata--cataccatatttaaatttg |
98 |
Q |
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| T |
45242105 |
gataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctatatacataccatatttaaatttg |
45242204 |
T |
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| Q |
99 |
atatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactttcaag |
198 |
Q |
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| T |
45242205 |
atatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactttcaag |
45242304 |
T |
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| Q |
199 |
ccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacagcaaatgggttttcagcgataaggagaatgtagatag |
298 |
Q |
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| T |
45242305 |
ccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacaacaaatgggttttcagggataaggagaatgtagatgg |
45242404 |
T |
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| Q |
299 |
ggcgtagtgacgtacaatatgtacagaaactaggtgtgttgttaagagatttcaacaataaaacaaaccaaaagtacacttcatgtaacatagtcaaat |
397 |
Q |
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| T |
45242405 |
ggcgtagtgacgtacaatatgtacagaaactaggtgtgttgttaagagatttcaacaataaaacaaaccaaaaatacacttcatgtaacatagtcaaat |
45242503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 402 - 488
Target Start/End: Original strand, 45242541 - 45242627
Alignment:
| Q |
402 |
gatacacatacatacaaaatcctagataataattgttttgaacacttctttacaccatacctaaatgacatataggccgtttttctt |
488 |
Q |
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| T |
45242541 |
gatacacatacatacaaaatcctagataataattgttttcaacacttctttacaccatacctaaatgacatataggtcgtttttctt |
45242627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 11425493 - 11425447
Alignment:
| Q |
106 |
aaacccaaacaacactaccgtacaactaacacaggttgaaccaaaat |
152 |
Q |
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| T |
11425493 |
aaacccaaacaacactaccatacgactaacacgtgttgaaccaaaat |
11425447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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