View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_low_40 (Length: 270)

Name: NF4568_low_40
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_low_40
NF4568_low_40
[»] chr5 (4 HSPs)
chr5 (164-270)||(4638868-4638972)
chr5 (62-106)||(4638766-4638810)
chr5 (18-62)||(4638699-4638743)
chr5 (62-105)||(33019052-33019095)
[»] chr8 (2 HSPs)
chr8 (62-99)||(29367250-29367287)
chr8 (62-106)||(9445500-9445544)
[»] chr2 (2 HSPs)
chr2 (62-106)||(37532899-37532943)
chr2 (62-104)||(32479082-32479124)
[»] chr1 (2 HSPs)
chr1 (69-106)||(27800725-27800762)
chr1 (69-106)||(40703935-40703972)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 4638868 - 4638972
Alignment:
Q  164 tggctagtcaatgattaatcgtgaatgattttagtagacatacattttttgtcttcctttaatcgttgaatgatttttgtagaaagcactaatcattctt 263  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4638868 tggctagccaatgattaatcgtgaatgattttagtagacatacatttttttt--tcctttaatcgttgaatgatttttgtagaaagcactaatcattctt 4638965  T
Q  264 tttaaaa 270  Q
    |||||||    
T  4638966 tttaaaa 4638972  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 4638766 - 4638810
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataacaatcttct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4638766 aacaagtaaaaatggattatattaacactgttataacaatcttct 4638810  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 4638699 - 4638743
Alignment:
Q  18 agaattgcagtggtgattgcttatggaacttgtgcgtggatggaa 62  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  4638699 agaattgcagcggtgattgcttatggaacttgtgcgtagatggaa 4638743  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 33019095 - 33019052
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataacaatcttc 105  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  33019095 aacaagtaaaaatggattatattaacattgtcataacaatcttc 33019052  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 29367287 - 29367250
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataaca 99  Q
    |||||||||||||| |||||||||||||||||||||||    
T  29367287 aacaagtaaaaatgaattatattaacactgttataaca 29367250  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 9445544 - 9445500
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataacaatcttct 106  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||    
T  9445544 aacaagcaaaaatggattatattaacaccgttaaaacaatcttct 9445500  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 37532943 - 37532899
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataacaatcttct 106  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||    
T  37532943 aacaagcaaaaatgaattatattaacactgctataacaatcttct 37532899  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 32479082 - 32479124
Alignment:
Q  62 aacaagtaaaaatggattatattaacactgttataacaatctt 104  Q
    ||||| ||||||||||||||||||||||||  |||||||||||    
T  32479082 aacaaataaaaatggattatattaacactgccataacaatctt 32479124  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 27800725 - 27800762
Alignment:
Q  69 aaaaatggattatattaacactgttataacaatcttct 106  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  27800725 aaaaatggattatataaacactgctataacaatcttct 27800762  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 40703935 - 40703972
Alignment:
Q  69 aaaaatggattatattaacactgttataacaatcttct 106  Q
    ||||||||||||||||||||||| || |||||||||||    
T  40703935 aaaaatggattatattaacactgctaaaacaatcttct 40703972  T

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