View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568_low_42 (Length: 267)
Name: NF4568_low_42
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_42 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 38487091 - 38486825
Alignment:
| Q |
1 |
aatttggactaggaactgctgattcattattataccaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38487091 |
aatttggactaggaactgctgattcattattataccaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaat |
38486992 |
T |
|
| Q |
101 |
aatcgaccccacagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486991 |
aatcgaccccacagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaat |
38486892 |
T |
|
| Q |
201 |
ccagtctatgacccaatctatatacatctcggctcaatacttgctccccatttccactggcaacctt |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486891 |
ccagtctatgacccaatctatatacatctcggctcaatacttgctccccatttccactggcaacctt |
38486825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 30121457 - 30121224
Alignment:
| Q |
34 |
accaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgaccccacagaaatgcataaacggtaaga |
133 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||| | |||| ||||||||| || || ||| ||||| ||| ||||| ||||| || || ||| |
|
|
| T |
30121457 |
accaagtgctttgttgttattgctgttactttccattgatttctcaacaccactaagggcgagatatagtcgactccatagaaaggcatatactgtcaga |
30121358 |
T |
|
| Q |
134 |
acaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgacccaatctatatacatctcggc |
233 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| | ||| ||||| || ||||||||||| || || ||||||| || |
|
|
| T |
30121357 |
accaccatcattgtgttgaagaagaaccccacagtagtgtagaagaatgaaagcattcggaaaaaatcaagcctatgacccaacctgtacacatctctgc |
30121258 |
T |
|
| Q |
234 |
tcaatacttgctccccatttccactggcaacctt |
267 |
Q |
| |
|
||| | ||| ||||| || ||||| |||||||| |
|
|
| T |
30121257 |
tcaggatttgttccccgttgccactagcaacctt |
30121224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University