View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_44 (Length: 266)
Name: NF4568_low_44
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 13519356 - 13519258
Alignment:
| Q |
138 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
236 |
Q |
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| T |
13519356 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13519258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 13608889 - 13608791
Alignment:
| Q |
138 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608889 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13608791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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