View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_48 (Length: 255)
Name: NF4568_low_48
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_48 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 7398 - 7630
Alignment:
| Q |
19 |
atgattattttgatacgatgtttgtggctataaatattggnnnnnnnctctcacacttttcacaacacactttcaattcacaattcatattattgaaagt |
118 |
Q |
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| T |
7398 |
atgattattttgatacgatgtttgtggctataaatattggtttttttctctcacacttttcacgacacactttcaattcacaattcatattattgaaa-t |
7496 |
T |
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| Q |
119 |
tctctctaaaattatacnnnnnnncctcattgttacattgtaac--nnnnnnnnnnatacctaattctcttatttcatttgattattgtcttcctttgat |
216 |
Q |
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| T |
7497 |
tttctcaaaaattatactttttttcctcattgttacattgtaactttttttgttttttacctaattctcttatttcatttcactattgtcttccgttgat |
7596 |
T |
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| Q |
217 |
ttaagtgggaactgaccatgtttttcatctctct |
250 |
Q |
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| T |
7597 |
ttaagtgggaactgaccatatttttcatttctct |
7630 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 29498985 - 29499061
Alignment:
| Q |
174 |
tacctaattctcttatttcatttgattattgtcttcctttgatttaagtgggaactgaccatgtttttcatctctct |
250 |
Q |
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| T |
29498985 |
tacctaattctcttatttcgtttggttattgtttttctttgatttaagtaggaactgcccatatttttcatttctct |
29499061 |
T |
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