View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_49 (Length: 254)
Name: NF4568_low_49
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 51 - 254
Target Start/End: Complemental strand, 6228260 - 6228057
Alignment:
| Q |
51 |
atagaaaagatagtattgtaatgggaaaatgactagagagaggagagatagatatgcatctaaccttagctagatatatggtcctcaatgctgcagaatc |
150 |
Q |
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| T |
6228260 |
atagaaaagatagtattgtaatgggaaaatgactagagagaggagagatagatatgcatctaaccttagctagatatatggtcctcaatgctgcagaatc |
6228161 |
T |
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| Q |
151 |
aaatgnnnnnnnnnnnnntacataagtcacgcctagttaactcatattgaattggtggtgacttcagtccaaagtttatgtcattataaaccgacatgca |
250 |
Q |
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| T |
6228160 |
aaatgaaaaattaaaaaatacataagtcacgcctagttaactcatattgaattggtggtgacttcagtccaaagtttatgtcattataaaccgacatgca |
6228061 |
T |
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| Q |
251 |
cctt |
254 |
Q |
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|||| |
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| T |
6228060 |
cctt |
6228057 |
T |
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