View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_54 (Length: 250)
Name: NF4568_low_54
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 31470283 - 31470122
Alignment:
| Q |
78 |
aaagcttattatgaccgagcaccgaagtccaacttatctaaacttaattgattctatttctaaaatgaagaacatttcagtccaacaataccactcactg |
177 |
Q |
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| T |
31470283 |
aaagcttattatgaccgatcatcgaagtcaaatttatctaaacttaattgattccatttctaaaatgaagaacatttcagtccaacaataccactcactg |
31470184 |
T |
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| Q |
178 |
gtaaatagcatgattcaataaccaaaactacaggtagtcccgacggcacggcatcctcctat |
239 |
Q |
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| T |
31470183 |
gtaaatagcatgattcaataaccaaaactacatgtagtcccgacggcacggcatcctcctat |
31470122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31470419 - 31470341
Alignment:
| Q |
1 |
ccttgaggagggattaaatctgaaatatatggaaacacgattaaatcacacaagagtttatcaagtctttcattgtcaa |
79 |
Q |
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| T |
31470419 |
ccttgaggagggattaaatctgaaatatatggaaacactattaaatcacacaagagtttatcaagtctttcattgtcaa |
31470341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 15836745 - 15836697
Alignment:
| Q |
189 |
gattcaataaccaaaactacaggtagtcccgacggcacggcatcctcct |
237 |
Q |
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| T |
15836745 |
gattcaacaaccgaaactacaggtagtcccgaggggacgacatcctcct |
15836697 |
T |
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