View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4568_low_58 (Length: 247)

Name: NF4568_low_58
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4568_low_58
NF4568_low_58
[»] chr4 (12 HSPs)
chr4 (1-228)||(7606160-7606387)
chr4 (1-228)||(7615174-7615401)
chr4 (1-228)||(7636988-7637218)
chr4 (1-105)||(7628668-7628772)
chr4 (105-226)||(7656209-7656330)
chr4 (171-228)||(7628612-7628669)
chr4 (109-179)||(39070932-39071002)
chr4 (112-173)||(39087996-39088057)
chr4 (112-164)||(39097682-39097734)
chr4 (1-52)||(7633490-7633541)
chr4 (112-171)||(39091389-39091448)
chr4 (122-179)||(39082336-39082393)
[»] chr7 (5 HSPs)
chr7 (34-228)||(8941738-8941931)
chr7 (1-228)||(8936069-8936287)
chr7 (1-228)||(8913561-8913784)
chr7 (1-52)||(8919086-8919137)
chr7 (1-38)||(8938845-8938882)
[»] chr3 (2 HSPs)
chr3 (108-228)||(40147440-40147560)
chr3 (108-228)||(8102379-8102499)
[»] scaffold0190 (1 HSPs)
scaffold0190 (113-179)||(4435-4501)
[»] chr8 (1 HSPs)
chr8 (112-173)||(15745020-15745081)
[»] chr6 (1 HSPs)
chr6 (111-228)||(6500423-6500540)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7606387 - 7606160
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttct 100  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |  | | |||  |||| || ||||||     
T  7606387 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 7606288  T
Q  101 tagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgt 200  Q
    ||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||| || ||| ||||    
T  7606287 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 7606188  T
Q  201 taatgtatttgctggaatagaagaaggt 228  Q
     |||||||||||||||||||||||||||    
T  7606187 aaatgtatttgctggaatagaagaaggt 7606160  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7615401 - 7615174
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataacc-aacatagccaaaaacaatttc 99  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||| || || ||||| || ||||| ||||||    
T  7615401 attgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctagg-tatcctaacatggcaaaaaataatttc 7615303  T
Q  100 ttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttg 199  Q
     ||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||   || ||||||     
T  7615302 atagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggactta 7615203  T
Q  200 ttaatgtatttgctggaatagaagaaggt 228  Q
    |||  || |||||||||||||||||||||    
T  7615202 ttacggtttttgctggaatagaagaaggt 7615174  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7637218 - 7636988
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaa---catagccaaaaacaatt 97  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||| |  | ||   ||| |  ||||| ||||    
T  7637218 attgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatt 7637119  T
Q  98 tcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggact 197  Q
    || ||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| || |||||    
T  7637118 tcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggact 7637019  T
Q  198 tgttaatgtatttgctggaatagaagaaggt 228  Q
    | |||  |||||||| |||||||||||||||    
T  7637018 tattacggtatttgccggaatagaagaaggt 7636988  T

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Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7628772 - 7628668
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7628772 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagcttccttaggataaccaacatagccaaaaacaatttct 7628673  T
Q  101 tagtc 105  Q
    |||||    
T  7628672 tagtc 7628668  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 7656209 - 7656330
Alignment:
Q  105 cattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaat 204  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||  || ||| | |||  |    
T  7656209 cattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgt 7656308  T
Q  205 gtatttgctggaatagaagaag 226  Q
    |  |||||||||||||||||||    
T  7656309 gcctttgctggaatagaagaag 7656330  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 7628669 - 7628612
Alignment:
Q  171 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggt 7628612  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 39071002 - 39070932
Alignment:
Q  109 agcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    |||||||||||  |||||||||||| ||| |||||||| || ||||||||||| ||||||||||| |||||    
T  39071002 agcagttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg 39070932  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 39088057 - 39087996
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 173  Q
    ||||||||| ||||||||||||||| ||||||||| || ||||| |||||||| | ||||||    
T  39088057 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcg 39087996  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 39097734 - 39097682
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgt 164  Q
    ||||||||| |||||||||||||||||||||| || || ||||| ||||||||    
T  39097734 agttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgt 39097682  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7633541 - 7633490
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaa 52  Q
    ||||||||||||||| |||||| | |||| |||||||| |||||||||||||    
T  7633541 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaa 7633490  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 39091448 - 39091389
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggtt 171  Q
    ||||||||  ||||||||||||| ||||||||||| || ||||| |||||||||| ||||    
T  39091448 agttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggtt 39091389  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 39082393 - 39082336
Alignment:
Q  122 ggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    ||||||||||||||||||||||||| || ||||| ||||| || | |||||| |||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgg 39082336  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 8941738 - 8941931
Alignment:
Q  34 cactacgagtcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttcttagtcattagcagttctccatggtttgatgttt 133  Q
    ||||| ||||||||||||| ||||||||||||| ||||| |  | | |||  |||| || |||||||||  |||||| ||||||||||||||||||||||    
T  8941738 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt 8941837  T
Q  134 atggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggt 228  Q
    ||||||||||||||||||||||||| ||| | || | |||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||    
T  8941838 atggtaatgatttcggatggggaaaacctatagcag-tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggt 8941931  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8936069 - 8936287
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttct 100  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||  ||         ||||  | ||||| ||||||     
T  8936069 attgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttagta---------acatgccaaaaaagaatttca 8936159  T
Q  101 tagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgt 200  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | |||| |||||||||||   || |||||| |    
T  8936160 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttat 8936259  T
Q  201 taatgtatttgctggaatagaagaaggt 228  Q
    ||  |||||||| |||||||||||||||    
T  8936260 tacagtatttgccggaatagaagaaggt 8936287  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8913561 - 8913784
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggat---aaccaacatagccaaaaacaatt 97  Q
    |||||||||||| |||| |||| |||||||||||| |||||||||||||||| ||||||||||||| ||||| |    |  ||||| |  ||||  ||||    
T  8913561 attgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaacatggtaaaaactaatt 8913660  T
Q  98 tcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggact 197  Q
    || ||  |||||| |||||||||| |||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||| || |||||    
T  8913661 tcatatccattagtagttctccatagtttgatgtttatggtaat-------gatggggaaagcctgtggcagttcgtagtggatataaaataaatggact 8913753  T
Q  198 tgttaatgtatttgctggaatagaagaaggt 228  Q
    | |||  |||||||  |||||||||||||||    
T  8913754 tattacagtatttgtcggaatagaagaaggt 8913784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8919086 - 8919137
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaa 52  Q
    ||||||||||||||| |||||| | |||| |||||||| |||||||||||||    
T  8919086 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaa 8919137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8938845 - 8938882
Alignment:
Q  1 attgcttcacacactgatgagatgttgaagaatcacta 38  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  8938845 attgcttcacacacggatgagaagttgaagaatcacta 8938882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 40147440 - 40147560
Alignment:
Q  108 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 207  Q
    ||||| ||| || |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||| ||||||| |  ||| |  ||| ||||    
T  40147440 tagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgta 40147539  T
Q  208 tttgctggaatagaagaaggt 228  Q
    |||||||||| ||||||||||    
T  40147540 tttgctggaaaagaagaaggt 40147560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 8102499 - 8102379
Alignment:
Q  108 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 207  Q
    ||||||||| |  ||||||||||||||||| ||| |||| ||||||||||| || ||||| ||||| |||||| |||||   |  |||||  ||  ||||    
T  8102499 tagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta 8102400  T
Q  208 tttgctggaatagaagaaggt 228  Q
    |||||||||||||||||||||    
T  8102399 tttgctggaatagaagaaggt 8102379  T

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Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 4501 - 4435
Alignment:
Q  113 gttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    ||||||| |||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 4435  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 15745020 - 15745081
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 173  Q
    ||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| ||||||    
T  15745020 agttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcg 15745081  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 6500540 - 6500423
Alignment:
Q  111 cagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtattt 210  Q
    |||||| || ||||||||| |||||||||||||||| |||||||| || || |||||  |||| |||| | |||||||  | ||  | |||| |||||||    
T  6500540 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtattt 6500441  T
Q  211 gctggaatagaagaaggt 228  Q
    ||||||| |||| |||||    
T  6500440 gctggaaaagaataaggt 6500423  T

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