View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_6 (Length: 489)
Name: NF4568_low_6
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 41560805 - 41561152
Alignment:
| Q |
16 |
atttctacgtgggtaatttcgtgagggaatccatgggaaacatttgatgtgtaatgtgagacaattcatgtaaactctacttgtgaaaagaaaattagag |
115 |
Q |
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| T |
41560805 |
atttctacgtgggtaatttcgtgagggaatccatgggaaacatttgatgtgtaatgtgagacaattcatgtaaactctacttgtgaaaagaaaattagag |
41560904 |
T |
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| Q |
116 |
agattgagagatcattggcagagtgaaaatagaatgttgaaaggggcttgagtaagtcttcgttgctctctctcctcatagtaggtctttaaagttaaat |
215 |
Q |
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| T |
41560905 |
agattgagagatcattggcagagtgaaaatagaatgttgaaaggggcttgagtaagtcttcgttgctctctctcctcatagtaggtctttaaagttaaat |
41561004 |
T |
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| Q |
216 |
cagataaacttttgttgttcatattcttctattttctatgttttgattactacactagaaatgaaatgggtgataaaacactccttcaagagattaaata |
315 |
Q |
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| T |
41561005 |
cacataaacttttggtgttcatattcttctattttctatgttttcattactacactagaaacgaaatgggtgataaaacactccttcaagagattaaata |
41561104 |
T |
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| Q |
316 |
atgttgcatgttccaaactagattcgaactcaagaaataactcatagt |
363 |
Q |
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| T |
41561105 |
atattgtatgtctcaaactagattcgaacccaagaaataactcatagt |
41561152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 484
Target Start/End: Original strand, 41561844 - 41561966
Alignment:
| Q |
361 |
agtatttatggtttatttgaagtgagctattttttaaggaaaaattgaagtggatttaaaagagacaaaatnnnnnnntcatatatttatggacaaaaac |
460 |
Q |
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| T |
41561844 |
agtatttatggtttatttgaagtgagctattttttaaggaaaaattgaagtgggtttaaaaaagacaaaat-aaaaaatcatatatttatggacaaaaac |
41561942 |
T |
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| Q |
461 |
agaataccgtatccaatccctttg |
484 |
Q |
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| T |
41561943 |
aaaataccgtatccactccctttg |
41561966 |
T |
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