View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_60 (Length: 246)
Name: NF4568_low_60
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38609982 - 38610218
Alignment:
| Q |
1 |
ttcgtagtaagcattctttgtatcctagattgtcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgttgagaagataa |
100 |
Q |
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| T |
38609982 |
ttcgtagtaaccattttttggatcctaaattttcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgttgagaagataa |
38610081 |
T |
|
| Q |
101 |
gagcaaatacattaccatgaccacaaccttttggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttagaagtccataa |
200 |
Q |
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| T |
38610082 |
gagcaaatacattaccatgaccacagccttttggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttagaagtccataa |
38610181 |
T |
|
| Q |
201 |
gacatgtggcctttccccaaacactaaagagtataat |
237 |
Q |
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| T |
38610182 |
gacatgttgcctttccccaaacactaaagagtataat |
38610218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 38605449 - 38605653
Alignment:
| Q |
33 |
tcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgttgagaagataagagcaaatacattaccatgaccacaacctttt |
132 |
Q |
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|||||||| || |||||||||||||| ||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||| | |||| | || | |
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| T |
38605449 |
tcagaatccgccattaataaacttcaagaactacaagtgcagcatgtcaatatatgttaagaagataagagcaaatacattaccacgtccacggctttct |
38605548 |
T |
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| Q |
133 |
ggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttagaagtccataagacatgtggcctttccccaaacactaaagagt |
232 |
Q |
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| T |
38605549 |
ggaaatactcataggccttgtcaaaatgaccctttgcatcactgagatcaggagttagaaatccacaagacgtaagggcattccccaagcaccaaagagt |
38605648 |
T |
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| Q |
233 |
ataat |
237 |
Q |
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|||| |
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| T |
38605649 |
gtaat |
38605653 |
T |
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