View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_61 (Length: 244)
Name: NF4568_low_61
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 30037882 - 30038101
Alignment:
| Q |
18 |
ccaaaatcttcgatgaacaatgtaagtagagaattaattaaatatcatgattttagaaaatatttggggatcagctt--------------cagataaaa |
103 |
Q |
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| T |
30037882 |
ccaaaatcttcgatggacaatgtaagtagagaattaattaaatatcatgattttagaaaatatttggggatcagcttcatattagatgcttcagataaaa |
30037981 |
T |
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| Q |
104 |
atgacacatctgtattactagattacaatgtgaagacactgactcaaaatatggtttgtcatactgaaagaaagagccactgcaattttatgtagcaatt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
30037982 |
atgacacatctgtattactagattacaatgtgaagacactgactcaaaatatggtttgtcatact----gaaagagccactgcacttttatgtagcaatt |
30038077 |
T |
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| Q |
204 |
ctcacagtattaagtcacgtaact |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
30038078 |
ctcacagtattaagtcacgtaact |
30038101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 30053297 - 30053516
Alignment:
| Q |
18 |
ccaaaatcttcgatgaacaatgtaagtagagaattaattaaatatcatgattttagaaaatatttggggatcagctt--------------cagataaaa |
103 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30053297 |
ccaaaatcttcaatgaacaatgtaagtagagaattaattaaatatcatgattttagaaaatatttggggatcagcttcatattagatgcttcagataaaa |
30053396 |
T |
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| Q |
104 |
atgacacatctgtattactagattacaatgtgaagacactgactcaaaatatggtttgtcatactgaaagaaagagccactgcaattttatgtagcaatt |
203 |
Q |
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| T |
30053397 |
atgacacatctgtattactagattacaatgtgaagacactgactcaaaatatggtttgtcatact----gaaagagccactgcacttttatgtagcaatt |
30053492 |
T |
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| Q |
204 |
ctcacagtattaagtcacgtaact |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
30053493 |
ctcacagtattaagtcacgtaact |
30053516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 30065313 - 30065355
Alignment:
| Q |
91 |
gcttcagataaaaatgacacatctgtattactagattacaatg |
133 |
Q |
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| T |
30065313 |
gcttcagataaaaatgacacatctgtattactagattacaatg |
30065355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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