View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_64 (Length: 240)
Name: NF4568_low_64
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_64 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 3452019 - 3451798
Alignment:
| Q |
19 |
gcttattggtgaagagttgattacctcaacttgacgctgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaag |
118 |
Q |
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| T |
3452019 |
gcttattggtgaagagttgattacctcaacttgacgctgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaag |
3451920 |
T |
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| Q |
119 |
gaataattaataattcataggcatagcccaattagtgaaaaagtacaaattttagtaacatgaaattaaaccaatttgttttgtattctgatttagtaac |
218 |
Q |
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| T |
3451919 |
gaataattaataattcataggcatagcccaattagtgaaaaagtacaaattttagtaacatgaaattaaaccaatttgttttgtattctgatttagtaac |
3451820 |
T |
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| Q |
219 |
ttttgaaagttttgcttacctt |
240 |
Q |
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| T |
3451819 |
ttttgaaagttttgcttacctt |
3451798 |
T |
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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 18810863 - 18810777
Alignment:
| Q |
39 |
ttacctcaacttgacgctgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaaggaataat |
125 |
Q |
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| T |
18810863 |
ttacctcaacttgacgctgcaatgattgcacatagtttataatttcatcaagcatgagtgcttttccagtgacctagaaggaataat |
18810777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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